Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f03
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    29   0.44 
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    26   4.1  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    26   4.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.4  
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    25   7.1  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   9.4  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   9.4  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 411 SLEHNYTREIVRLMTTLPVPSNRNTPLHSCSERHAQLFLPPAATVSVEGGDACAPEYPGT 590
           +L H+ T +       + +PS   TP ++ S  H+ L  P A+T++     A     P  
Sbjct: 400 NLNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSL 459

Query: 591 AS 596
           A+
Sbjct: 460 AN 461


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 254 NTGAIILIDAVMTARILDLGVCCINHRRD 340
           +TG+  +  AV T+RIL L   C NH++D
Sbjct: 211 DTGSPEVQAAVYTSRILALSDHCKNHKKD 239


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 520 NCAWRSLQECNGVLRLDGTGKVVI-NLTISRV*LCSKERFHGTMPGDIPPRRCLALPT 350
           +C++ ++ +CNG L L G    ++ NL+ S +     +  +    G+I P   L + T
Sbjct: 483 SCSYTAINDCNGNLLLAGADMAIMENLSYSEIKDDLNDAKYICFDGNISPSLMLDITT 540


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 468  PSNRNTPLHSCSERHAQLFLPPAATVSVEGGDACAP 575
            P+NR  PL   + + A  + PP  TVSV    A +P
Sbjct: 1015 PANRVVPLPPTASQRASAYEPP--TVSVPSPSALSP 1048


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 465 VPSNRNTPLHSCSERHAQLFLPPAAT 542
           +  +RN P    +E H  L+ PPAAT
Sbjct: 14  ISRSRNRPYFFNTETHESLWEPPAAT 39


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 405  NRSLEHNYTREIVRLMTTLPVPSNRN--TPLHSCSERHAQLFLPP 533
            NR+    +T E  ++++  P  S +   TP+ S + + AQ ++PP
Sbjct: 894  NRAESKVHTLETPKVISARPAESVKQPLTPVPSMTSQSAQSYIPP 938


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 565 ASPPSTETVAAGGKNN 518
           A  PST+++AAGG NN
Sbjct: 70  AFSPSTKSIAAGGLNN 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,722
Number of Sequences: 5004
Number of extensions: 49223
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)