Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f03
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    33   0.26 
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    29   3.2  
10_08_0742 + 20244984-20247008                                         29   4.2  
08_01_0893 - 8789491-8791416                                           28   5.6  
07_01_0417 - 3183561-3184640                                           28   5.6  
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335...    28   7.4  
03_01_0653 - 4778265-4778902,4779738-4779853,4779982-4780051,478...    28   7.4  
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788...    27   9.7  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 610 PADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSLQE 494
           PADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 519 LFLPPAATVSVEGGD--ACAPEYPGTASCKSAGVCXSA 626
           L +PP    +V  GD  + A + P  ASC++AG C +A
Sbjct: 99  LQIPPPERRAVGDGDLLSSAGDLPDAASCRAAGSCAAA 136


>10_08_0742 + 20244984-20247008
          Length = 674

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 616 HTPADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSLQECNGVLRLDGTGKVVINLTI 437
           H   DL+  V   S     P +  T   GGK N    S Q     +  DG+ K ++N+TI
Sbjct: 161 HVGVDLNSLVSNVS----EPAAYFTDGGGGKRNLTLESAQPIQAWVDYDGSAK-ILNVTI 215

Query: 436 SRV 428
           + V
Sbjct: 216 APV 218


>08_01_0893 - 8789491-8791416
          Length = 641

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 628 PALXHTPADLHDAVPGYSGAHASPPSTETVAAG 530
           PA+ H   D H A  G++GA    P  ET+AAG
Sbjct: 199 PAVEHLAHDRHAARDGFTGASFELPQ-ETLAAG 230


>07_01_0417 - 3183561-3184640
          Length = 359

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 486 PLHSCSERHAQLFLPPAATVSVEGGDACAPEY 581
           P+HS    HA LF PPAA  +        P Y
Sbjct: 171 PVHSFRHLHATLFPPPAAAAAAARRQRRLPSY 202


>09_04_0161 -
           15232074-15232139,15232299-15232406,15233417-15233506,
           15233617-15233733,15234408-15234527,15234930-15236168
          Length = 579

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 315 TPKSRIRAVMTASMRMIAPVFSTSTSRHFSKAR 217
           TP SR+    T + R + PV +T T  H S  R
Sbjct: 89  TPSSRVSTPSTPASRSVTPVRNTVTEGHKSSRR 121


>03_01_0653 -
           4778265-4778902,4779738-4779853,4779982-4780051,
           4780189-4780402
          Length = 345

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -1

Query: 526 KNNCAWRSLQECNGVLRLDGTGKVVINLTISRV*LCSKERFHGTMPGDIPPRRCLALPTH 347
           KN   W  L E + +   DG   V+    I     CS +RF      D  P + LALP  
Sbjct: 98  KNGYVWNDLSENDVIYPSDGVEYVLKGSEIFPG--CSSDRFPHLRVTDRSPAKRLALPPS 155

Query: 346 NK 341
           +K
Sbjct: 156 HK 157


>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
            20480164-20481199,20481275-20481402,20481673-20481732,
            20481774-20481878,20481971-20482055,20482315-20482470,
            20482562-20482831,20482877-20483671,20483844-20483903,
            20484062-20485134
          Length = 1777

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 571  AHASPPSTETVAAGGKNNCAWRSLQECNGVLRLDGTGKVVINLTI 437
            A A  PS+  +A G   N AW  L   +G  +    G +    T+
Sbjct: 1445 AEAVQPSSTAMAGGDNQNTAWAQLASTSGQSQPQAAGNMTWGATL 1489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,532
Number of Sequences: 37544
Number of extensions: 338906
Number of successful extensions: 1045
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)