Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24f03
(649 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC112936-1|AAI12937.1| 1363|Homo sapiens regulatory factor X dom... 32 2.0
AK128045-1|BAC87248.1| 1281|Homo sapiens protein ( Homo sapiens ... 32 2.0
AK126103-1|BAC86441.1| 1078|Homo sapiens protein ( Homo sapiens ... 32 2.0
AF087142-1|AAC62086.1| 473|Homo sapiens TED protein protein. 31 3.5
AL158069-1|CAD18889.1| 472|Homo sapiens transmembrane protein 2... 31 4.7
BC121038-1|AAI21039.1| 501|Homo sapiens PRDM5 protein protein. 30 6.2
BC121037-1|AAI21038.1| 599|Homo sapiens PRDM5 protein protein. 30 6.2
AF272897-1|AAF78077.1| 630|Homo sapiens PR-domain zinc finger p... 30 6.2
>BC112936-1|AAI12937.1| 1363|Homo sapiens regulatory factor X domain
containing 2 protein.
Length = 1363
Score = 31.9 bits (69), Expect = 2.0
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 420 HNYTREIVRLMTTLPVPSNRNTPL-HSCSERHAQLFLPPAATV-SVEGGDACAPEYPGTA 593
H + +V++ T PSN NTPL HS S A + +V ++ G + + PG+
Sbjct: 369 HMSSLNVVKMTTISLTPSNSNTPLKHSASVSSATGTTEESRSVPQIKNGSVVSLQSPGSR 428
Query: 594 SCKSAG 611
S + G
Sbjct: 429 SSSAGG 434
>AK128045-1|BAC87248.1| 1281|Homo sapiens protein ( Homo sapiens
cDNA FLJ46165 fis, clone TESTI4002868, weakly similar
to DNA-binding protein RFX5. ).
Length = 1281
Score = 31.9 bits (69), Expect = 2.0
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 420 HNYTREIVRLMTTLPVPSNRNTPL-HSCSERHAQLFLPPAATV-SVEGGDACAPEYPGTA 593
H + +V++ T PSN NTPL HS S A + +V ++ G + + PG+
Sbjct: 369 HMSSLNVVKMTTISLTPSNSNTPLKHSASVSSATGTTEESRSVPQIKNGSVVSLQSPGSR 428
Query: 594 SCKSAG 611
S + G
Sbjct: 429 SSSAGG 434
>AK126103-1|BAC86441.1| 1078|Homo sapiens protein ( Homo sapiens
cDNA FLJ44115 fis, clone TESTI4046819. ).
Length = 1078
Score = 31.9 bits (69), Expect = 2.0
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 420 HNYTREIVRLMTTLPVPSNRNTPL-HSCSERHAQLFLPPAATV-SVEGGDACAPEYPGTA 593
H + +V++ T PSN NTPL HS S A + +V ++ G + + PG+
Sbjct: 84 HMSSLNVVKMTTISLTPSNSNTPLKHSASVSSATGTTEESRSVPQIKNGSVVSLQSPGSR 143
Query: 594 SCKSAG 611
S + G
Sbjct: 144 SSSAGG 149
>AF087142-1|AAC62086.1| 473|Homo sapiens TED protein protein.
Length = 473
Score = 31.1 bits (67), Expect = 3.5
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Frame = +3
Query: 315 FVALIIVAILLCVG---RARHLRGGMSPGIVPWNRSLEHNYTREIVRLMTTLPVPSNRNT 485
F L+ + LC G RAR L M P PW E L P P +
Sbjct: 53 FTVLLADHLWLCAGARPRARELSSAMRP---PWGAGRERQPVPPRAVLPVPPPPPGEPSA 109
Query: 486 PLHSCSERHAQL--FLPPAATVSVEGGDACAPEYPG-TASC 599
P +C R++ L P A + V GG PE G A+C
Sbjct: 110 PPGTCGPRYSNLTKAAPAAGSRPVCGG---VPEPTGLDAAC 147
>AL158069-1|CAD18889.1| 472|Homo sapiens transmembrane protein 28
protein.
Length = 472
Score = 30.7 bits (66), Expect = 4.7
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Frame = +3
Query: 315 FVALIIVAILLCVG---RARHLRGGMSPGIVPWNRSLEHNYTREIVRLMTTLPVPSNRNT 485
F L+ + LC G RAR L M P PW E L P P +
Sbjct: 53 FTVLLADHLWLCAGARPRARELSSAMRP---PWGAGRERQPVPPRAVLPLPPPPPGEPSA 109
Query: 486 PLHSCSERHAQL--FLPPAATVSVEGGDACAPEYPG-TASC 599
P +C R++ L P A + V GG PE G A+C
Sbjct: 110 PPGTCGPRYSNLTKAAPAAGSRPVCGG---VPEPTGLDAAC 147
>BC121038-1|AAI21039.1| 501|Homo sapiens PRDM5 protein protein.
Length = 501
Score = 30.3 bits (65), Expect = 6.2
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 478 AIRRCTLVANATRSYFCHQ-QQRFPSKGVTHVHLSTLEQRHANRR 609
+++R L+ N+ R++ CH F K +VH+ + +RH R
Sbjct: 387 SLQRHLLIHNSERTFKCHHCDATFKRKDTLNVHVQVVHERHKKYR 431
>BC121037-1|AAI21038.1| 599|Homo sapiens PRDM5 protein protein.
Length = 599
Score = 30.3 bits (65), Expect = 6.2
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 478 AIRRCTLVANATRSYFCHQ-QQRFPSKGVTHVHLSTLEQRHANRR 609
+++R L+ N+ R++ CH F K +VH+ + +RH R
Sbjct: 387 SLQRHLLIHNSERTFKCHHCDATFKRKDTLNVHVQVVHERHKKYR 431
>AF272897-1|AAF78077.1| 630|Homo sapiens PR-domain zinc finger
protein 5 protein.
Length = 630
Score = 30.3 bits (65), Expect = 6.2
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 478 AIRRCTLVANATRSYFCHQ-QQRFPSKGVTHVHLSTLEQRHANRR 609
+++R L+ N+ R++ CH F K +VH+ + +RH R
Sbjct: 418 SLQRHLLIHNSERTFKCHHCDATFKRKDTLNVHVQVVHERHKKYR 462
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,855,355
Number of Sequences: 237096
Number of extensions: 1792018
Number of successful extensions: 4167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4167
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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