Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f03
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4b protein.
          Length = 833

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/14 (57%), Positives = 14/14 (100%)
 Frame = +1

Query: 37  LLKHVRDLCNFNSF 78
           ++KH+R++CNFNS+
Sbjct: 713 IMKHLREMCNFNSY 726


>AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4a protein.
          Length = 877

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/14 (57%), Positives = 14/14 (100%)
 Frame = +1

Query: 37  LLKHVRDLCNFNSF 78
           ++KH+R++CNFNS+
Sbjct: 713 IMKHLREMCNFNSY 726


>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = -2

Query: 342 RSRR*LMQQTPKSRIRAVMTASMRMIAPVFSTSTSRHFSKARGFIPILILSTRSEVVN 169
           R+ R L Q  PK    A+   + R +AP    S +  FS   GF  +   ST  EVVN
Sbjct: 809 RAERLLFQLLPKHV--AIELKAGRTVAPKMYDSATVMFSDIVGFTKLCSASTPIEVVN 864


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 616 HTPADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSLQE 494
           + P   ++ VP Y       P TE+    G ++  W S++E
Sbjct: 25  YVPPQGYEGVPRYRAIDPDRPKTESSEMSGADHLEWESVKE 65


>U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical
           protein C56G2.1a protein.
          Length = 867

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 381 MSPGIVPWNRSLEHNYTREIVRLMTTLPVPSNRNTPLHSCSERH 512
           MSP    W+  +E ++  E  RL  +  +  +  +PL    ++H
Sbjct: 353 MSPASFSWSEEMEKSFNEEEFRLNESSDIDRSPASPLRHLQQQH 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,414,199
Number of Sequences: 27780
Number of extensions: 290692
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)