Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24e24
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical ...    31   0.74 
AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical ...    29   3.9  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    28   6.9  
AF026204-7|AAB71247.1|  272|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical
           protein H34P18.1 protein.
          Length = 361

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 102 MYFFLTAQHASLVAIXVDLYFCKLRS*NFSN 10
           +Y+   A HAS + + V + FC+++S NF+N
Sbjct: 116 IYYLAAAFHASSLYLAVGMAFCRVKSLNFAN 146


>AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical
           protein H16D19.4 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 432 LVGGFARNPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKRLDK*LFG 274
           + GG   +P        N L F  F    HSN  +A++ + ++ K++D  + G
Sbjct: 276 IAGGVTFHPSAMYTRNSNFLNFANFIIMQHSNKEIASMRYELMKKKVDSDVIG 328


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +1

Query: 484 KTKSNDRLNNENTST----DYDTEDEERVNTFNSRKRRVVAKRAFNSXSKKIPIGKVVST 651
           K K   RL  EN       D D++DE+       +++   A+++  S SKK   GK    
Sbjct: 172 KRKEKKRLEKENRKIKEEDDEDSDDEDDEKAKKKKRKSKGAEKSKPSTSKKDAGGK-KEP 230

Query: 652 PRKRLK 669
           P+K++K
Sbjct: 231 PKKKVK 236


>AF026204-7|AAB71247.1|  272|Caenorhabditis elegans Hypothetical
           protein C30E1.2 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -2

Query: 413 GIQEFFNVFILTYFSSSAFLALC---IAMSSSPPFIL 312
           GIQ++  ++IL + S+S FLAL      +S  P FI+
Sbjct: 40  GIQKWQQLYILAFSSASQFLALAANIFELSGVPGFII 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,776,753
Number of Sequences: 27780
Number of extensions: 196582
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)