Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24e23
         (729 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05FU9 Cluster: Putative peptide chain release factor A...    39   0.14 

>UniRef50_Q05FU9 Cluster: Putative peptide chain release factor A;
           n=1; Candidatus Carsonella ruddii PV|Rep: Putative
           peptide chain release factor A - Carsonella ruddii
           (strain PV)
          Length = 229

 Score = 38.7 bits (86), Expect = 0.14
 Identities = 25/66 (37%), Positives = 38/66 (57%)
 Frame = -2

Query: 521 INLEKKIYKNIMFSFYSGKQSLPFELASDPPTNLFTSIQFRVESLYRDDTLLNKNALRRV 342
           IN  K IYK  M+  +  KQ++ FE+ S+   + F  I  +VE+   D  LLN++ + RV
Sbjct: 19  INFAKDIYK--MYVKFFEKQNINFEIISN---SNFKEIILKVENNVFDKKLLNESGIHRV 73

Query: 341 AAIPRS 324
             IP+S
Sbjct: 74  QRIPKS 79


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,302,781
Number of Sequences: 1657284
Number of extensions: 11917675
Number of successful extensions: 21953
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 21485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21947
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)