Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24e23
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    29   0.68 
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.4  

>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -2

Query: 449 ELASDPPTNLFTSIQFRV 396
           E A+ PPTNL T++QFRV
Sbjct: 145 ERATQPPTNLETALQFRV 162


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 550 IQAGHQYIFAQASNCKETRNSLRYYLPTD 636
           IQ+ H YI +  SN   T +   +Y PTD
Sbjct: 165 IQSAHPYISSLNSNYPTTWHFASHYYPTD 193


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 703  FTKN--RCVQRH*INSRFVKVYVRSR*VDSNVNYFESPCSLKPV 578
            ++KN   C+Q+H     F + ++ S  +D+ V Y  S C L  V
Sbjct: 879  YSKNCLECIQKHFTTKEFDEQFLNSGPLDAAVIYDSSNCYLSIV 922


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,973
Number of Sequences: 5004
Number of extensions: 52419
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)