Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24e23
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676           29   5.0  
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    28   8.7  
03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118           28   8.7  

>03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676
          Length = 240

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 16  KYGGVACVFGAFNYFEIV 69
           +YGGV  +   FNYFE+V
Sbjct: 142 RYGGVRFIINGFNYFELV 159


>08_02_0550 +
           18509365-18509589,18509668-18510644,18510828-18511802,
           18511885-18512142,18512216-18512326,18512418-18512496,
           18512595-18512687,18512773-18512958
          Length = 967

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 140 WHRRAVFKGSYESPPQTRRERCS--RTISK*LKAPNTHATPPYFASK 6
           WH++ +  GS +SPP+  R  C   R + +  + P   A+P +   K
Sbjct: 466 WHKKDIQLGSTDSPPRILRSLCHALRNMDEEPRDPPEDASPRHQPEK 512


>03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118
          Length = 258

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 16  KYGGVACVFGAFNYFEIV 69
           K GGV    G FNYFE+V
Sbjct: 160 KQGGVRFTMGGFNYFELV 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,864,005
Number of Sequences: 37544
Number of extensions: 323157
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)