Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24e23
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-11|ABO16465.1|  449|Caenorhabditis elegans F-box a prot...    31   0.64 
Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical pr...    31   0.84 
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    28   7.9  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    28   7.9  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    28   7.9  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    28   7.9  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    28   7.9  

>AC084159-11|ABO16465.1|  449|Caenorhabditis elegans F-box a protein
           protein 221 protein.
          Length = 449

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -2

Query: 518 NLEKKIYKNIMFSFYSGKQSLPFELASDPPTNLFTSIQFRVESLYRD-DTLLNKNALRRV 342
           ++E + Y+   + FY G + L +  + +PP   F  +  ++ S   D  T+L++  +RRV
Sbjct: 102 SMEYRDYEFWYYLFYHGNKELHYVQSEEPPQTSFVDLPIQIVSDILDGSTVLDRMIVRRV 161

Query: 341 A 339
           +
Sbjct: 162 S 162


>Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical
           protein B0391.6 protein.
          Length = 483

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -2

Query: 518 NLEKKIYKNIMFSFYSGKQSLPFELASDPPTNLFTSIQFRVESLYRDD-TLLNKNALRRV 342
           ++E + Y+   + FY G + L +  + +PP   F  +  ++ S   D  T+L++  +RRV
Sbjct: 136 SMEYRDYEFWYYLFYHGNKELHYVQSEEPPQTSFVDLPIQIVSDILDGLTVLDRMIVRRV 195

Query: 341 A 339
           +
Sbjct: 196 S 196


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 656  EPRINSVALHATVFGKFWLFLAYF 727
            + R N V L  TVFG  W+FL +F
Sbjct: 1261 QSRRNRVDLLITVFGVIWIFLHFF 1284


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 656  EPRINSVALHATVFGKFWLFLAYF 727
            + R N V L  TVFG  W+FL +F
Sbjct: 1295 QSRRNRVDLLITVFGVIWIFLHFF 1318


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            a protein.
          Length = 1562

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 656  EPRINSVALHATVFGKFWLFLAYF 727
            + R N V L  TVFG  W+FL +F
Sbjct: 1353 QSRRNRVDLLITVFGVIWIFLHFF 1376


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 656  EPRINSVALHATVFGKFWLFLAYF 727
            + R N V L  TVFG  W+FL +F
Sbjct: 1406 QSRRNRVDLLITVFGVIWIFLHFF 1429


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 656  EPRINSVALHATVFGKFWLFLAYF 727
            + R N V L  TVFG  W+FL +F
Sbjct: 1325 QSRRNRVDLLITVFGVIWIFLHFF 1348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,599,569
Number of Sequences: 27780
Number of extensions: 296993
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)