Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24e15
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    28   1.4  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    28   1.4  
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.4  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   4.2  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.4  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.4  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.4  

>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -1

Query: 644 YSLVISLDTMF*TTVPFTSMKLANDLVTDASRV--LPFVSRITITRLYLSSCFFT*ELAS 471
           Y L IS  +     + F+  K    ++T  S++  +P+V+R     +YL++ FF   L S
Sbjct: 192 YLLNISSQSQVLDLLAFSGYKFVGLILTSLSKLFEMPWVTRFVFLYMYLATAFFL--LRS 249

Query: 470 QTLVLFPTFSLA 435
               + P  ++A
Sbjct: 250 LKYAVLPESTMA 261


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 517 RDCIYHRVSLHKNWLPRPWCYFQPSPWLPQRCP 419
           RD +     LH N  PR  C+FQPS +     P
Sbjct: 463 RDNLRQHERLHVNASPRLACFFQPSGYYSSGAP 495


>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 412 KEKGIFVVAKEKVGNNTRVWEASSYVK 492
           K+ G+F +AK K+ N T+VW  + Y K
Sbjct: 4   KKGGLFKIAK-KLRNGTKVWARAGYFK 29


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 278 WLLVWPFTHCYGIIFIHSLN-QDW 346
           W++V      Y ++F HSLN +DW
Sbjct: 162 WIMVVVLAQKYKVLFYHSLNLRDW 185


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 513 IVFIIVFLYIRTGFPDPGVISNL 445
           I F  + LY+RT F +PG +  +
Sbjct: 355 ISFTCIGLYVRTAFQNPGYVDKI 377


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 516 RNCYARHEWQHS*GI 560
           + CYA++EW+H  GI
Sbjct: 147 QKCYAKNEWRHVLGI 161


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +1

Query: 394 TLYTTFKEKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKS 573
           T++   K +GIF  + ++V NN   W         D  Y  +I    T        V +S
Sbjct: 527 TVFVKLKLQGIFSSSFQQVSNNMYSWIYDHVFSSSDHAYESLIYYMKTG----HKQVVQS 582

Query: 574 FANF 585
           F+ F
Sbjct: 583 FSIF 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,150
Number of Sequences: 5004
Number of extensions: 52271
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)