Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24e15
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0297 - 42583439-42583697,42583763-42583953,42583995-425842...    30   1.9  
09_02_0085 + 4111333-4111492,4114766-4116044,4116113-4116206,411...    29   4.4  
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    29   4.4  
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348...    28   5.8  
03_06_0680 - 35497868-35497884,35498058-35501961                       28   5.8  
03_05_0777 + 27636342-27637115                                         28   5.8  
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    28   7.6  

>01_07_0297 -
           42583439-42583697,42583763-42583953,42583995-42584201,
           42584291-42584362,42584472-42584507
          Length = 254

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 390 FDPLHYIQREGHLCGSQGEG 449
           ++ +  IQREGHLCG  G G
Sbjct: 182 YEIVRIIQREGHLCGMTGNG 201


>09_02_0085 +
           4111333-4111492,4114766-4116044,4116113-4116206,
           4116297-4116545
          Length = 593

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 421 GIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVN 597
           G+ V+A   +  +T V+     V +H DKY L++    T  +TR      ++  F+D++
Sbjct: 444 GLLVMASGDLHEHTAVFFR---VFRHHDKYKLLMCTDLTKSSTRAGVYKPAYGGFVDMD 499


>07_01_0426 +
           3239274-3239386,3239472-3239702,3242516-3242642,
           3242729-3242788,3242868-3242960,3243073-3243369,
           3243450-3243761,3243857-3244114,3244227-3244375,
           3244470-3245102,3245367-3245640,3245736-3245777,
           3246332-3246586,3246700-3246711
          Length = 951

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 309 MGLSLSIPSIKTGSNHLRVIIFHTDGYFDPLHY 407
           M LSL +PS  T    + V +F TDG  +P+ Y
Sbjct: 434 MYLSLPVPS--TAKRTMTVTVFSTDGSIEPISY 464


>07_01_0460 +
           3486040-3486758,3486804-3486876,3487067-3487132,
           3488090-3488251,3488427-3488457,3488767-3489206
          Length = 496

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 322 YPFPQSRLVLIICVSSYFILMGILTLYTTFKE 417
           YPF    L++ IC S +     ILTLYT +K+
Sbjct: 453 YPFLFDALMMFICFSQFV----ILTLYTNYKQ 480


>03_06_0680 - 35497868-35497884,35498058-35501961
          Length = 1306

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 139 EAAKINKWDGAAAKNAVDDAIREVMTG 219
           EAA+  K +   AKN+  DA++EV++G
Sbjct: 246 EAARKEKNENVMAKNSPQDALKEVLSG 272


>03_05_0777 + 27636342-27637115
          Length = 257

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 133 TAEAAKINKWDGAAAKNAVDDAIREVMTGDLKCKESFAL 249
           TAEAA++ +W   A  + VD A R  +  D++ + ++ L
Sbjct: 130 TAEAAELERWRRHAMASLVDAAKRAAVMKDMEIERAWGL 168


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 529 RDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLS 657
           RDT  NT +  +++S    +      V N++S++ T L + L+
Sbjct: 617 RDTKSNTDKPPISQSSGQIVSFTSNPVFNVISSKPTTLSNGLA 659


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,144,301
Number of Sequences: 37544
Number of extensions: 349835
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)