Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24e14
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    27   0.85 
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   6.0  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   6.0  
SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    24   7.9  
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    24   7.9  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    24   7.9  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    24   7.9  

>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
 Frame = +3

Query: 39  RQASFVSFSICTVQSVPSQSLSFFVATNKLPFCDDQEF*FAGQQHIRC--*CYSTRRD-G 209
           R A ++S S+  ++ +    LS     N  PFC D  +    QQH +C   C  +R+D  
Sbjct: 124 RLAVYLSTSLVYIKQL---HLSKPALGNSWPFCLDHSYILEDQQHNKCLVHCNQSRKDLL 180

Query: 210 GCG-------GRNISLYL-VERKEGSPTARSSRRESAKIVEHSA 317
           GC        G     YL ++   G+P + SS+   +  + HS+
Sbjct: 181 GCSQLFLLLKGSFTHEYLTIDFYNGTPVSVSSKLHVSPSLYHSS 224


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 58  RFQSVPCKVFHHNHC 102
           R   +PC  + HNHC
Sbjct: 50  RIAKIPCGHYFHNHC 64


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 313 LCSTIFADSRLELRAVGEPSFLSTK*REMFRPPQPPSRL 197
           LC+T  ++  LE R   +P FL++    +  P   PS +
Sbjct: 625 LCNTSISELGLERRGKPDPDFLTSAEFVVMNPKGSPSSI 663


>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 210 GCGGRNISLYLVERKEGSPTARSSRRES 293
           G   +  SL+     E SP+  SSRRES
Sbjct: 101 GSPNKEPSLHTKRPSESSPSGASSRRES 128


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 200 ARWRLWRSEHFSLLGGKKGR 259
           A +R+W   H+ +L G KG+
Sbjct: 107 APFRVWYETHYGILMGSKGK 126


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 200 ARWRLWRSEHFSLLGGKKGR 259
           A +R+W   H+ +L G KG+
Sbjct: 107 APFRVWYETHYGILMGSKGK 126


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 70  VPCKVFHHNHCRFSLPQINCHFAMTKNSNSQGS 168
           V CK F  N CR+     NC    T  SN Q +
Sbjct: 2   VVCKYFLQNRCRYG---TNCKNQHTVPSNGQNA 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,249
Number of Sequences: 5004
Number of extensions: 32569
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)