Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24e10
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    27   1.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.3  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.7  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   10.0 
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   10.0 

>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 156 VRIIPEETEHGLLTMDAKYMVS 221
           V + PE T+HGL ++ + Y++S
Sbjct: 74  VNVFPENTKHGLPSLSSHYLLS 95


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 365  YTYNIQLI*LFFVKLEHYLKYMFDQDTDIAKLMINS*LY 481
            YTY + L  L F  L   +   FDQD D +  M N  LY
Sbjct: 1124 YTY-VMLFNLLFTSLPVIIAGCFDQDVDASVSMKNPSLY 1161


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 203 CKIYGISEVFLFHFCLFLIGDIFC 274
           C IYG  +  L  +C+F IG   C
Sbjct: 148 CDIYGRKKTLLAAYCVFGIGCFLC 171


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 294 ALIYTLTSKQISCENIFNYVNRYNIHTI 377
           +L+  +  + I+ E +FN  +R+++HT+
Sbjct: 52  SLVVQVKRQGITAEPVFNLYSRFSVHTL 79


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 88  NTNVPEDLKTKQTRHKKFQSIFSXRYF 8
           NT+V ED++ + +R K+F S      F
Sbjct: 43  NTSVFEDVEAQDSRQKRFSSTLEGNRF 69


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 492 CRNIYNYELIISFAMSVSWSNI 427
           C+NI +Y+ ++SFA   S++++
Sbjct: 314 CQNISSYQRLVSFAHLYSYTSV 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,242
Number of Sequences: 5004
Number of extensions: 37108
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)