Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24e05
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.89 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 STALPKMVINVDLKGFEEFSKYTRAID 209
           STA P MVIN+    +E+F  +   +D
Sbjct: 505 STATPMMVINMLQNLYEQFDSFCGQLD 531


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 415 SDCPF*TGTLCPSNILY 365
           S+ PF T T+ PS+I Y
Sbjct: 564 SESPFTTSTIMPSDIFY 580


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 415 SDCPF*TGTLCPSNILY 365
           S+ PF T T+ PS+I Y
Sbjct: 564 SESPFTTSTIMPSDIFY 580


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 358  VGD--REYWKDKECPFRTDSRSKLMVIPT 438
            VGD  RE++K +    RTDS   + ++P+
Sbjct: 1338 VGDPTREWYKGQGEQIRTDSTRNIQILPS 1366


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 358  VGD--REYWKDKECPFRTDSRSKLMVIPT 438
            VGD  RE++K +    RTDS   + ++P+
Sbjct: 1334 VGDPTREWYKGQGEQIRTDSTRNIQILPS 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -2

Query: 651 IY*WLLEELKYFMVDNIIYSYVIVGNLSIRICLKRI 544
           IY W      YF  +   +   +  NLS+  C  R+
Sbjct: 530 IYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV 565


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 16  IILPNALYRIFINFSI 63
           II+PN   RIF N S+
Sbjct: 133 IIMPNVYIRIFPNGSV 148


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 16  IILPNALYRIFINFSI 63
           II+PN   RIF N S+
Sbjct: 133 IIMPNVYIRIFPNGSV 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,512
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)