Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24e01
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 134 8e-33
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 123 3e-29
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 121 8e-29
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 120 2e-28
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 117 2e-27
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 109 3e-25
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 101 1e-22
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 99 6e-22
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 90 2e-19
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 88 1e-18
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 79 7e-16
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 77 2e-15
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 75 1e-14
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 72 8e-14
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 71 1e-13
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 71 1e-13
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 71 2e-13
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 66 4e-12
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 53 4e-08
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 46 6e-06
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 45 1e-05
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.59
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 4.1
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 7.2
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 7.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 9.5
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 9.5
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 134 bits (325), Expect = 8e-33
Identities = 63/123 (51%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Frame = +3
Query: 279 NFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNR-VNLSIWDTAG 455
N K+VLLGD VGK+SL+LR+++D+F++ +T+ A FL + L I+ N V L IWDTAG
Sbjct: 14 NQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAG 73
Query: 456 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAGNKIDLE 635
QE++ +L P+YYRN+N AI+VYDIT S K K+W+KEL++ I + +AGNK+DL
Sbjct: 74 QERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLA 133
Query: 636 HER 644
ER
Sbjct: 134 QER 136
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 123 bits (296), Expect = 3e-29
Identities = 51/123 (41%), Positives = 81/123 (65%)
Frame = +3
Query: 282 FKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 461
FK++L+GD VGK+ LLLR+ +D + E +++T+ F + + G V L IWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
Query: 462 KFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAGNKIDLEHE 641
+F + YYR ++G I+VYD+TD+DSF VK W++E+ + +N ++ GNK D+ +
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDK 128
Query: 642 RTV 650
+ V
Sbjct: 129 KVV 131
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 121 bits (292), Expect = 8e-29
Identities = 54/126 (42%), Positives = 85/126 (67%)
Frame = +3
Query: 276 RNFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 455
R FK+V LG+ VGKTSL+ R++ D+F+ + T+ FL+K + + V L +WDTAG
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 456 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAGNKIDLE 635
QE+F +L P Y R+S+ AI+VYDIT+ +SF + W+++++ G D+ +V+ GNK DL
Sbjct: 70 QERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLA 129
Query: 636 HERTVS 653
+R V+
Sbjct: 130 DKRQVT 135
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 120 bits (289), Expect = 2e-28
Identities = 53/124 (42%), Positives = 83/124 (66%)
Frame = +3
Query: 282 FKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 461
FK VL+GD VGK++LL+R+ ++FN + +T+ F + + ++ ++ IWDTAGQE
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
Query: 462 KFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAGNKIDLEHE 641
++ A+ YYR + GA++VYDIT + SF V W+KEL++ S+I +++ GNK DL H
Sbjct: 71 RYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHL 130
Query: 642 RTVS 653
R VS
Sbjct: 131 RAVS 134
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 117 bits (281), Expect = 2e-27
Identities = 50/123 (40%), Positives = 78/123 (63%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 464
K++L+GD VGK+ LLLR+ ED F +TT+ F + + ++G R+ L IWDTAGQE+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 465 FHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAGNKIDLEHER 644
F + YYR + G +L+YD+TD+ SF V+ W +++ ++ ++ GNK D E +R
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQR 130
Query: 645 TVS 653
VS
Sbjct: 131 QVS 133
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 109 bits (263), Expect = 3e-25
Identities = 51/127 (40%), Positives = 89/127 (70%), Gaps = 4/127 (3%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNIN-GN---RVNLSIWDTA 452
K+VL G GK+ LL R+++++++++ T+ F ++ +++ GN R+ L IWDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 453 GQEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAGNKIDL 632
GQEKF ++ YYR + GA+LVYD+T++DSF ++ +W+ +++ M S I +V+AG+K DL
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDL 130
Query: 633 EHERTVS 653
+++R VS
Sbjct: 131 QNQRQVS 137
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 101 bits (241), Expect = 1e-22
Identities = 49/127 (38%), Positives = 78/127 (61%), Gaps = 4/127 (3%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 464
KVV+LGD VGKT L+ +++ KF+ ++ T+ A FL K + ++ V L +WDTAGQE+
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 465 FHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSD---INLVIAGNKIDLE 635
F +LG +YR ++ ++VY++ + SF V+NW +E D +I GN+ID +
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKD 129
Query: 636 -HERTVS 653
+R VS
Sbjct: 130 ASKRAVS 136
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 98.7 bits (235), Expect = 6e-22
Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 464
KV++LG+ VGKTS++ +Y+ KF++ + T+ A FL K + ++ V L +WDTAGQE+
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 465 FHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLG----SDINLVIAGNKIDL 632
F +LG +YR ++ +LVYD+ + SF + +W E ++ GNK+D+
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDV 129
Query: 633 EHER 644
E ++
Sbjct: 130 EEQK 133
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 90.2 bits (214), Expect = 2e-19
Identities = 45/127 (35%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Frame = +3
Query: 276 RNFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 455
R +K+V++GDG VGK++L ++ I+ F +++ T++ ++ K+ I+G L + DTAG
Sbjct: 7 REYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSY-RKKCEIDGEGALLDVLDTAG 65
Query: 456 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSD-INLVIAGNKIDL 632
QE++ A+ Y R G +LVY+IT SF ++ + +++ ++ D +V+ NK DL
Sbjct: 66 QEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDL 125
Query: 633 EHERTVS 653
E ER VS
Sbjct: 126 EAERVVS 132
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 87.8 bits (208), Expect = 1e-18
Identities = 39/121 (32%), Positives = 72/121 (59%)
Frame = +3
Query: 282 FKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 461
FK+VL+GDG GKT+ + R++ +F +K++ TL + N + ++WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 462 KFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAGNKIDLEHE 641
K L YY I+++D+T +++ V +W ++L ++ +I +V+ GNK+D++
Sbjct: 70 KLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVC-ENIPIVLCGNKVDVKER 128
Query: 642 R 644
+
Sbjct: 129 K 129
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 78.6 bits (185), Expect = 7e-16
Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 464
++ +LG VGK+SL ++Y+E+ F E + T++ TF +K + G I DTAGQ++
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 465 FHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSD-INLVIAGNKIDLEHE 641
+ L + +G +LVY IT + SF VK ++ G++ + +V+ GNK DL +
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQ 126
Query: 642 RTVS 653
R V+
Sbjct: 127 RAVT 130
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 77.0 bits (181), Expect = 2e-15
Identities = 32/115 (27%), Positives = 65/115 (56%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 464
KV ++GD +GKTSL++ Y++ F+E+ TL F+ K ++I + SIWD GQ +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 465 FHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAGNKID 629
F + P+ ++ + ++D++ + + +K W ++ + + + ++I G K D
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILI-GTKYD 125
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 74.5 bits (175), Expect = 1e-14
Identities = 35/120 (29%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 464
K+V++GDG GKT LL+ + + F E ++ T+ ++ + ++G + L++WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHIELALWDTAGQED 66
Query: 465 FHALGPIYYRNSNGAILVYDITDEDSFRKV-KNWVKELKKMLGSDINLVIAGNKIDLEHE 641
+ L P+ Y +S+ ++ + + +S V + W+ E+ S++ +++ G K+DL ++
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFC-SNLPILLVGCKVDLRND 125
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 71.7 bits (168), Expect = 8e-14
Identities = 36/120 (30%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 464
K+V++GDG GKT LL+ + + F E ++ T+ ++ + ++G V L++WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHVELALWDTAGQED 66
Query: 465 FHALGPIYYRNSNGAILVYDITDEDSFRKV-KNWVKELKKMLGSDINLVIAGNKIDLEHE 641
+ L P+ Y +S+ ++ + + DS V + W+ E+ S + +++ K DL ++
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFC-SSLPILLVACKADLRND 125
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 70.9 bits (166), Expect = 1e-13
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 464
K+V++GDG GKTSLL + F +++ T+ +++ ++G V L++WDTAGQE+
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSD-CRVDGKSVQLALWDTAGQEE 68
Query: 465 FHALGPIYYRNSNGAILVYDITDEDSFRKVK-NWVKELKKMLGSDINLVIAGNKIDLEHE 641
+ L P+ Y ++ ++ + I DS V W++E+ L ++ ++ G K DL +
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEI-NTLCPNVPFILVGMKADLRSD 127
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 70.9 bits (166), Expect = 1e-13
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 464
K+V+LGDG GKTSLL + + F + + T+ +++ + ++GN + LS+WDTAGQE+
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHD-IFVDGNSIELSLWDTAGQEE 73
Query: 465 FHALGPIYYRNSNGAILVYDITDEDSFRKV-KNWVKELKKMLGSDINLVIAGNKIDL 632
+ L + Y +++ ++ + + DS V W+ E+ + LV+ K DL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC-PGVKLVLVALKCDL 129
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 70.5 bits (165), Expect = 2e-13
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNK-RLNINGNRVNLSIWDTAGQE 461
K+V++GDG GKT LL+ + F E+++ T+ ++ N + L++WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 462 KFHALGPIYYRNSNGAILVYDITDEDSFRKV-KNWVKELKKMLGSDINLVIAGNKIDLEH 638
++ L P+ Y NSN +L + I S V + W E++ +V+ G K DL
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFC-PRTPIVLVGLKADLRK 134
Query: 639 ERTVS 653
+R +
Sbjct: 135 DRNAT 139
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 66.1 bits (154), Expect = 4e-12
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 464
K V++GDG VGKT LL+ Y +KF ++ T+ + + I L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYA-VTVMIGDEPYTLGLFDTAGQED 63
Query: 465 FHALGPIYYRNSNGAILVYDITDEDSFRKVK-NWVKELKKMLGSDINLVIAGNKIDLEHE 641
+ L P+ Y ++ ++ + +T SF VK W E+ + +I G +IDL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHC-PGVPCLIVGTQIDLRDD 122
Query: 642 RTV 650
+V
Sbjct: 123 PSV 125
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 52.8 bits (121), Expect = 4e-08
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Frame = +3
Query: 270 GARNFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDT 449
G R +++++G GKT++L + K E +TT+ N + ++ ++WD
Sbjct: 14 GKREMRILMVGLDAAGKTTILYKL---KLGEI-VTTIPTIGFNVE-TVEYRNISFTVWDV 68
Query: 450 AGQEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGS----DINLVIAG 617
GQ+K L Y++N+ G I V D D + ++ +EL++ML D L++
Sbjct: 69 GGQDKIRPLWRHYFQNTQGIIFVVDSNDRE---RISEAHEELQRMLNEDELRDALLLVFA 125
Query: 618 NKIDL 632
NK DL
Sbjct: 126 NKQDL 130
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 45.6 bits (103), Expect = 6e-06
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Frame = +3
Query: 276 RNFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 455
+ ++++LG GKT++L + K N+ + T+ N + + ++WD G
Sbjct: 20 KEMRILMLGLDAAGKTTILYKL---KLNQS-VVTIPTVGFNVE-TVTYKNIKFNVWDVGG 74
Query: 456 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGS----DINLVIAGNK 623
Q+K L Y+ + G I V D D + + + +EL +++ D L++ NK
Sbjct: 75 QDKIRPLWRHYFTGTKGLIFVVDSADSNRISEAR---QELHRIISDREMRDCLLLVLANK 131
Query: 624 IDL 632
DL
Sbjct: 132 QDL 134
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 44.8 bits (101), Expect = 1e-05
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Frame = +3
Query: 276 RNFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 455
R +V+LLG GKT++L + + NE T F + L + G R +IWD G
Sbjct: 15 REVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTF---GFQIRTLEVEGLR--FTIWDIGG 69
Query: 456 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKEL---KKMLGSDINLVIAGNKI 626
Q+ Y+ ++ I V D D+ + +N ++EL +K+L + I LV+A NK
Sbjct: 70 QKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSI-LVLA-NKS 127
Query: 627 DL 632
D+
Sbjct: 128 DV 129
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.1 bits (62), Expect = 0.59
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Frame = +3
Query: 285 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNIN--GNRVNLSIWDTAGQ 458
KV+L+G GK+S+ + + K L AT + ++ GN V L++WD GQ
Sbjct: 4 KVLLMGRSGSGKSSMR-SIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 459 EKF-----HALGPIYYRNSNGAILVYDITDED 539
E F A +RN I V+D+ +
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 477 GPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKM-LGSDINL-VIAGNK 623
G + RN NG + D DED + +KEL++ L D NL V+ G+K
Sbjct: 781 GALRKRNRNGFAALDDSDDEDYSNLRREKLKELRRQKLLEDGNLNVLEGDK 831
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 533 ISNIVNQNRTIRVSVVYWSQSMKLLLASCIPNGKIDTISINIQ 405
++ + Q+ V V W ++ LLL + K+D ++++IQ
Sbjct: 203 VNQVTQQHPNDMVLCVQWLANVSLLLFYLKKDNKLDDLTVDIQ 245
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 552 VKNWVKELKKMLGSD 596
VKNW EL K LG D
Sbjct: 335 VKNWANELVKWLGKD 349
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -3
Query: 575 QFFHPIFYLSK*IFISNIVNQNRTIRVSVVYW 480
QFFH I++ IF+ +T+ + W
Sbjct: 1141 QFFHTIYHTDTNIFVGAPTGSGKTMAAELATW 1172
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 453 GQEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAG 617
G+E+F PI++R SN + + E + +KN+ K+ N+++ G
Sbjct: 355 GRERFKICEPIFHRPSNETVSL----PEAIYITIKNYAANYKRRNDLWENIIVLG 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,339
Number of Sequences: 5004
Number of extensions: 48801
Number of successful extensions: 149
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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