Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24e01
         (655 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.           135   1e-33
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    82   1e-17
AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein...    26   1.2  
AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.    24   3.7  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score =  135 bits (327), Expect = 1e-33
 Identities = 60/123 (48%), Positives = 87/123 (70%)
 Frame = +3

Query: 282 FKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 461
           FK+VLLG+  VGK+SL+LR+++ +F+E   +T+ A FL + L I+   V   IWDTAGQE
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQE 84

Query: 462 KFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAGNKIDLEHE 641
           ++H+L P+YYR +  AI+VYDI + DSF + K WVKEL++    +I + +AGNK DL + 
Sbjct: 85  RYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADLANS 144

Query: 642 RTV 650
           R V
Sbjct: 145 RVV 147


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 82.2 bits (194), Expect = 1e-17
 Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
 Frame = +3

Query: 276 RNFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 455
           R  K V++GDG VGKT +L+ Y  D F  +++ T    + +  + ++G +V+L +WDTAG
Sbjct: 5   RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNY-SAPMVVDGVQVSLGLWDTAG 63

Query: 456 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKV-KNWVKELKKMLGSDINLVIAGNKIDL 632
           QE +  L P+ Y  ++  ++ Y +    SF  V   W  E+K     D  +++ G KIDL
Sbjct: 64  QEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHC-PDAPIILVGTKIDL 122

Query: 633 EHER-TVS 653
             +R T+S
Sbjct: 123 REDRETIS 130


>AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 459

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 306 GCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSI 440
           GCVG    L+    +  N KH   L+    N  + ++G  V + +
Sbjct: 72  GCVGNLMALIHLWRNVRNTKHALMLKCLLTNDLIGLSGMFVQMCL 116


>AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.
          Length = 187

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 533 ISNIVNQNRTIRVSVVYWSQSMKLLLASCIPNG 435
           ISN+V  +   R   +YW+ +++ ++    P+G
Sbjct: 76  ISNVVTLDVDRRTGEIYWADTIEDVIMRSTPDG 108


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,765
Number of Sequences: 2352
Number of extensions: 10768
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)