Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d24
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   183   1e-47
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   182   2e-47
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   2.9  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   2.9  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   2.9  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   8.9  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  183 bits (446), Expect = 1e-47
 Identities = 82/113 (72%), Positives = 93/113 (82%)
 Frame = +2

Query: 95  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 274
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 275 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 433
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  182 bits (444), Expect = 2e-47
 Identities = 81/113 (71%), Positives = 93/113 (82%)
 Frame = +2

Query: 95  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 274
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 275 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 433
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 94  SIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGP 204
           SI SP+ SVG   +  D +  S + P+ + G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 156 APCTVSLFSEYTDTKGRATDRLISLL 79
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 169 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 264
           PV VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 16  VAWRMVFITAISVYFGGIA-SLK*RNESIGSPTFSVGVF 129
           V W +VF+    ++ GG+A  LK   +S+    F V  F
Sbjct: 343 VGWGLVFVLICVIWGGGLAFQLKYTRKSVAESDFVVTDF 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,073
Number of Sequences: 5004
Number of extensions: 39163
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)