Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24d24
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 167 5e-42
07_01_0578 + 4295386-4296489,4297394-4297507 165 2e-41
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 34 0.078
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.078
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.14
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 31 0.42
03_05_0366 - 23505755-23506441 31 0.55
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 2.2
04_01_0588 + 7657510-7657992,7658397-7658843 29 2.9
02_04_0457 + 23093020-23093343,23093798-23093806 29 2.9
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 28 3.9
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 5.1
08_02_1285 - 25881091-25881798 28 5.1
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 5.1
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 6.8
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 6.8
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 6.8
03_01_0147 - 1170481-1171260,1171332-1171511 27 6.8
02_03_0152 - 15767985-15768317 27 6.8
09_06_0153 - 21243108-21245660 27 8.9
04_04_1394 - 33213852-33214406,33214487-33214678,33214777-332148... 27 8.9
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 167 bits (406), Expect = 5e-42
Identities = 78/113 (69%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Frame = +2
Query: 98 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 274
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 275 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 433
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 115
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 165 bits (400), Expect = 2e-41
Identities = 76/111 (68%), Positives = 89/111 (80%), Gaps = 2/111 (1%)
Frame = +2
Query: 107 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 280
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 281 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 433
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWH 116
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 33.9 bits (74), Expect = 0.078
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL N I +PTF +G K G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.078
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 287 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 397
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 31.5 bits (68), Expect = 0.42
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL N I +PT +G K G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.55
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 173 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 349
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 350 HRSGQGA 370
+ + + A
Sbjct: 168 NDNDEEA 174
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 209 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 379
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 380 MCRGGRMFAPTKPWRRW 430
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 272 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 376
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = -1
Query: 365 PDRTYEYHHHGHAEFGRQHVRYPMIRHWFGDQPP 264
P + +HHHGH + + H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 413 SWGRTYVHHDTCYRRHPDRTYEYHH 339
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>08_02_1285 - 25881091-25881798
Length = 235
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 133 KERDGAGCSQAPPVRVQGAHTSGPG 207
+E DG G ++A V +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 356 TYEYHH-HGHAEFGRQHVRYPMIRH 285
T+++HH HGH FGR H +P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHH 166
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 182 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 295
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 176 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 346
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 347 T 349
T
Sbjct: 215 T 215
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +2
Query: 266 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 424
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 64 GIASLK*R-NESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>02_03_0152 - 15767985-15768317
Length = 110
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Frame = -1
Query: 377 YRRHPDRTYEYHHHGHAEFGRQHVRY-----PMIRHWFGDQPP 264
YR P HG AEF RQ R P HW +PP
Sbjct: 19 YRYRPSPMLPELSHGVAEFSRQSTRRHAPWPPSGGHWSSSEPP 61
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 156 APCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDK 34
APCTV +F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>04_04_1394 -
33213852-33214406,33214487-33214678,33214777-33214826,
33215002-33215218
Length = 337
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 61 GGIASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
G ASL N + PT + K G + + + + GAHT G + C+ F
Sbjct: 168 GTTASLDAANNDLPPPTSDLADLIKSFSDKGLTASDMIALSGAHTIGQAR-CTNF 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,015
Number of Sequences: 37544
Number of extensions: 358783
Number of successful extensions: 1363
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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