Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24d24
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 160 6e-40
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 0.49
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 28 3.4
AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever sho... 27 6.0
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 27 6.0
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 27 6.0
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 27 8.0
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 160 bits (388), Expect = 6e-40
Identities = 75/110 (68%), Positives = 86/110 (78%)
Frame = +2
Query: 104 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 283
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 284 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 433
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 31.1 bits (67), Expect = 0.49
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +2
Query: 236 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 406
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 407 PTKP 418
KP
Sbjct: 197 APKP 200
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 392 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 309
HHD +++H + ++ HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
protein K03H1.5 protein.
Length = 1385
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 301 YRTCCRPNSACPWWWYS*VRSGC--LR*HVSWWTYVRPH 411
YRTCC+ C ++++ + +GC R + + Y PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861
>AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform b protein.
Length = 461
Score = 27.5 bits (58), Expect = 6.0
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 107 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 280
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 281 TSAESWGTGRAVARIPRVRGGGTHRSGQG 367
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 27.5 bits (58), Expect = 6.0
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 107 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 280
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 281 TSAESWGTGRAVARIPRVRGGGTHRSGQG 367
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 27.5 bits (58), Expect = 6.0
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 107 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 280
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 281 TSAESWGTGRAVARIPRVRGGGTHRSGQG 367
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/58 (20%), Positives = 25/58 (43%)
Frame = +2
Query: 89 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 262
MS++V P +S V + + F++ P ++ D H+ + + CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,823,963
Number of Sequences: 27780
Number of extensions: 250304
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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