Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d23
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical pr...    31   0.52 
AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.      29   1.6  
AF154122-1|AAF74523.1|  669|Caenorhabditis elegans N-acetylgluco...    29   1.6  
AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation...    29   1.6  
Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical pr...    27   8.4  
DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium depend...    27   8.4  
AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion transpo...    27   8.4  
AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transpor...    27   8.4  

>Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical
           protein W04D2.2a protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 299 ILSRWLARRNLDCCTKTPILQCRAATIVFCAIWCKTANTIL 421
           IL+ WLA +    CT   I+      +V CA+WC +  T L
Sbjct: 84  ILTGWLAMKGAVYCTHPNIIYISG--MVVCALWCSSCMTAL 122


>AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.
          Length = 669

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 57  CVGALYIFNHYLEPLGVSRFVKFKINCQIN*SKRYYKKNGKHEQHYARHHCERPNQ 224
           CV  L+IF+ ++ PLG   F  + I+   N SKRY +++ K+  +      E P +
Sbjct: 7   CVALLFIFSAFITPLG---FFYYTIS---NESKRYSEESEKNYGYQTLEFTESPEE 56


>AF154122-1|AAF74523.1|  669|Caenorhabditis elegans
           N-acetylglucosaminyltransferase V protein.
          Length = 669

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 57  CVGALYIFNHYLEPLGVSRFVKFKINCQIN*SKRYYKKNGKHEQHYARHHCERPNQ 224
           CV  L+IF+ ++ PLG   F  + I+   N SKRY +++ K+  +      E P +
Sbjct: 7   CVALLFIFSAFITPLG---FFYYTIS---NESKRYSEESEKNYGYQTLEFTESPEE 56


>AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation
           related protein 2 protein.
          Length = 669

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 57  CVGALYIFNHYLEPLGVSRFVKFKINCQIN*SKRYYKKNGKHEQHYARHHCERPNQ 224
           CV  L+IF+ ++ PLG   F  + I+   N SKRY +++ K+  +      E P +
Sbjct: 7   CVALLFIFSAFITPLG---FFYYTIS---NESKRYSEESEKNYGYQTLEFTESPEE 56


>Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical
           protein F52B5.1 protein.
          Length = 1119

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 339 QQSKLRRASHLDNMGANAPFF*VIFVFNYKI*YVFIFTVDLGVHNDVWRNVARVCHF 169
           + SK RR S    + + AP   V+F+   K     +FT    ++N+ WR  AR   F
Sbjct: 8   RMSKARRESQSIELSSLAPGTRVMFLLKEKENTPALFTEMGELNNEEWRETARWVKF 64


>DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium dependent
           chloride bicarbonateanion exchanger alternative variant
           a protein.
          Length = 1161

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 339 QQSKLRRASHLDNMGANAPFF*VIFVFNYKI*YVFIFTVDLGVHNDVWRNVARVCHF 169
           + SK RR S    + + AP   V+F+   K     +FT    ++N+ WR  AR   F
Sbjct: 50  RMSKARRESQSIELSSLAPGTRVMFLLKEKENTPALFTEMGELNNEEWRETARWVKF 106


>AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion
           transporter ABTS-1 protein.
          Length = 1119

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 339 QQSKLRRASHLDNMGANAPFF*VIFVFNYKI*YVFIFTVDLGVHNDVWRNVARVCHF 169
           + SK RR S    + + AP   V+F+   K     +FT    ++N+ WR  AR   F
Sbjct: 8   RMSKARRESQSIELSSLAPGTRVMFLLKEKENTPALFTEMGELNNEEWRETARWVKF 64


>AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transporter
           protein.
          Length = 1119

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 339 QQSKLRRASHLDNMGANAPFF*VIFVFNYKI*YVFIFTVDLGVHNDVWRNVARVCHF 169
           + SK RR S    + + AP   V+F+   K     +FT    ++N+ WR  AR   F
Sbjct: 8   RMSKARRESQSIELSSLAPGTRVMFLLKEKENTPALFTEMGELNNEEWRETARWVKF 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,065,631
Number of Sequences: 27780
Number of extensions: 207050
Number of successful extensions: 559
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)