Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d22
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    24   1.3  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.3  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   4.0  

>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 421 LATHIACPSRCTTCPRKFCVP 483
           + TH   P +CT CP+ F  P
Sbjct: 1   IRTH-TLPCKCTICPKAFSRP 20


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 180 IDYCLEEERESNSKLLEVVSE-GRNSSSV 263
           + +CL+EE  + S+L+E++ + G+  +SV
Sbjct: 95  LTFCLQEEGGTTSQLIELLGDAGKLLASV 123


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 211 VTLNCWKWFPK 243
           V LNCWK  PK
Sbjct: 726 VMLNCWKECPK 736


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,313
Number of Sequences: 336
Number of extensions: 2211
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)