Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d22
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    29   0.82 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   4.4  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   7.7  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   7.7  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 84  WNLYVQLKEMRRNIYIKRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVV 236
           W     LK +R    +K+R     A Y   C++  CL+EE   N  LLE V
Sbjct: 541 WKPMPDLKVVRSRPSLKQRP-LRSAEYVRVCELK-CLQEEEFDNKVLLEQV 589


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +3

Query: 69  LAVQCWNLYVQLKEMRRNIYIKRRAEAEKASYDHYCDIDYC 191
           + +Q  N ++QL+  + N Y+++R+      +  + D ++C
Sbjct: 139 MRIQLANRHIQLRAPKYNSYLRQRSRLAYQVHSFFNDREFC 179


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 126 YIKRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSS 257
           Y++   E E    ++  ++ + LE+E ESNS   +VV   R  S
Sbjct: 665 YLEDMDEGEMLDANNLPEMQFALEQELESNSSDDDVVEVHRELS 708


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 165 DHYCDIDYCLEEERESNSKLLEVVSEGRNSSSVAA 269
           +H   +D CL+E   +NS+LL+V S+  N+ ++ A
Sbjct: 680 EHIDFLDTCLKECMLTNSRLLKVQSKLLNTCAMFA 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,039
Number of Sequences: 5004
Number of extensions: 36396
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)