Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d22
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0377 + 17442942-17443529,17443616-17444158                       31   0.84 
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539     29   3.4  
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    29   4.5  

>07_03_0377 + 17442942-17443529,17443616-17444158
          Length = 376

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 492 RPVWYTKLSWARCTPAWARYMCCQNRTRCGCRTETMDVEMA 370
           RP W  K SW +       Y  C+ R  CG  T    V +A
Sbjct: 332 RPYWIIKNSWGKAWGEQGYYRLCRGRNVCGVDTMVSAVAVA 372


>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
          Length = 1908

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 567  VWAKTLACAD**FLRPATEAGTLCTRPVWYTKLSWARCTPAWARY 433
            VWA++L   D    R  T AG     P+W  ++ W+  +P  A Y
Sbjct: 1835 VWARSLCVDDLVLRRVQTRAGLSKLSPMWEGRIEWS-ASPGRAPY 1878


>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
            5579676-5579795,5581616-5581744,5581828-5581953,
            5582945-5583000,5583084-5583183,5585155-5585272,
            5585374-5585583,5585902-5586226,5587094-5587187,
            5588021-5588129,5588246-5588514,5589153-5589280,
            5589983-5590217,5590858-5591046,5591326-5591609,
            5591698-5591890,5592040-5592207,5592429-5592514,
            5594391-5594550
          Length = 1412

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 48   IMGVLTILAVQC-WNLYVQLKEMRRNIYIKRRAEAEKASYDHYC 176
            I  +L++LA  C W+     K+ RR   I R  E  K+ YDH C
Sbjct: 1000 IHSILSVLAYPCAWSW----KQWRRRKKIHRLQEYVKSEYDHSC 1039


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,837,469
Number of Sequences: 37544
Number of extensions: 274219
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)