Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d19
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    28   1.00 
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    27   3.0  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    26   5.3  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   5.3  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   5.3  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    26   5.3  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   7.0  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.3  

>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 128 VMCACSI*MPSRRHRLGDNGSTHALYLE-TIVEETSD 235
           V   CS  M     RL D+    ALYL+ +IVEET+D
Sbjct: 340 VTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETND 376


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -2

Query: 345 SDSLSHSDPAFAGT*MTESASESDSHVPPEDFSERKSSLVSSTMVSRYKA 196
           S  ++ SDPA++GT +  S   +    P  + ++  S+  ++  VS + A
Sbjct: 614 SSDMAFSDPAYSGTTLRSSVDLNTPEYPFSNRNDSDSTFTNNKYVSPWDA 663


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 233 RLSPRLWFRGTKREYCHYH 177
           R  PRL ++    EYCH+H
Sbjct: 226 RRDPRLSWKALGGEYCHFH 244


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 543 PQPEPICLPKT*ARTVDTARDLDGRPHPHIGV 638
           P P P   P+  + + +TA+DLD    P + V
Sbjct: 338 PSPTPQSAPRAQSASTETAQDLDFLTPPRLSV 369


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 233 DDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSESERE 352
           +DL  E++S    + +S   SV      +  E D ++ERE
Sbjct: 620 EDLEDEENSSDNEMEESSGSSVTAENEESADEVDFQTERE 659


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 291 SASESDSHVPPEDFSERK 238
           +A+ SD H+PP++ SE K
Sbjct: 178 AAAVSDFHIPPKELSEHK 195


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +2

Query: 155 PSRRHRLGDNGSTHALYLETIVEETSDDLRSEKSSGGTWLSDSDADSVIHVPANAGSECD 334
           P + H   +   + +   E+    +  +  SE +   +  SDS+++S      ++ S  D
Sbjct: 93  PEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSD 152

Query: 335 SESE 346
           SESE
Sbjct: 153 SESE 156


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 200 KREYCHYHPIDVAGSAFR*NTHT 132
           +REYC   P+   GSA   N+H+
Sbjct: 30  EREYCSDCPLQAKGSACNGNSHS 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,497
Number of Sequences: 5004
Number of extensions: 41283
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)