Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d19
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280           33   0.19 
02_02_0224 - 8033098-8034552                                           31   0.78 
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333...    29   2.4  
05_03_0038 + 7612866-7613132,7615691-7616608                           29   2.4  
11_03_0057 + 9375083-9375088,9375904-9376031,9376107-9376166,937...    28   5.5  
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209...    28   5.5  
09_02_0210 + 5812428-5812468,5812633-5812895,5814064-5814214,581...    28   5.5  
05_01_0311 + 2452230-2452232,2452401-2452809,2454136-2454263,245...    28   5.5  
01_05_0050 + 17579872-17580103,17580206-17580262,17581178-175814...    28   5.5  
10_01_0204 + 2199778-2200835,2201212-2201311                           28   7.2  
08_02_0955 + 22994266-22995630                                         28   7.2  

>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
          Length = 422

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 482 ARREPRMTFRVTRIERGSRSAKVSRSLRARNPAR 381
           ARREP   FR+ R   G  SA+  ++ R RNPA+
Sbjct: 312 ARREPSPLFRILRTLFGLCSAEAKKNRRLRNPAK 345


>02_02_0224 - 8033098-8034552
          Length = 484

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 170 RLGDNGSTHALYLETIVEETSDDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSESER 349
           R G+NG+   +YL         D  +++S+   WL    A SV++V   +G     E  R
Sbjct: 235 RDGENGAFPPVYLVGPFVRPRSDEDADESACLEWLDRQPAGSVVYVSFGSGGALSVEQTR 294

Query: 350 EWA 358
           E A
Sbjct: 295 ELA 297


>12_02_1283 - 27532143-27532517,27532602-27532906,27533053-27533311,
            27534412-27534618,27534726-27535181,27535866-27535963,
            27536657-27536785,27537371-27537605,27538932-27539039,
            27539110-27539160,27539261-27539445,27540207-27540274,
            27541535-27541600,27541678-27541730,27542536-27542653,
            27542743-27542844,27543525-27543682,27543763-27543840,
            27543978-27544069,27544308-27544458
          Length = 1097

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 372  DDAASGIPRPQAPTHFRAPRASLNSSHSKGHARLPPRRACRQTP 503
            +D  SG  + Q     R  +AS N +HS  + R+P R +  Q P
Sbjct: 975  NDMKSGQGQGQRRQRHRHTKASSNKAHSSSYPRVPSRSSNTQRP 1018


>05_03_0038 + 7612866-7613132,7615691-7616608
          Length = 394

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 482 ARREPRMTFRVTRIERGSRSAKVSRSLRARNPAR 381
           ARREP   FR+ R   G  SA+  ++ R RN A+
Sbjct: 300 ARREPSPLFRILRSLFGLCSAEAKKNRRLRNSAK 333


>11_03_0057 +
           9375083-9375088,9375904-9376031,9376107-9376166,
           9376832-9376892,9377434-9377583,9377667-9377822,
           9377905-9378116,9378572-9378673,9378785-9378924,
           9379781-9379932
          Length = 388

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 381 ASGIPRPQAPTHFRAPRASLNSSHSKGHARLPPRRACRQTP 503
           ++G   P A  HF+   A L   ++KG    PP R     P
Sbjct: 251 SAGFMYPSAVDHFKKQFAYLEEHYAKGSTAAPPERQHNSLP 291


>10_08_1059 +
           22618999-22619206,22620386-22620416,22620440-22620974,
           22621065-22621319
          Length = 342

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 390 IPRPQAPTHFRAPRASLNSSHSKGHARLPPRRACRQTPSS 509
           +PRP  PTH+  P  S +         LP   +  +  SS
Sbjct: 18  VPRPTGPTHYSHPPGSCSGCRPASPLHLPSAESAHRPVSS 57


>09_02_0210 +
           5812428-5812468,5812633-5812895,5814064-5814214,
           5814678-5814763,5815182-5815286,5815444-5815504,
           5816078-5816087
          Length = 238

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 497 LATGSARREPRMTFRVTRIERGSRSAKVSRSLRARNPARGVV 372
           L   +A   PR +    RI  G+RSA+ + SLR R+   G +
Sbjct: 4   LGLSTAFSPPRGSCIAVRIRHGARSARSNLSLRRRSAGGGAI 45


>05_01_0311 +
           2452230-2452232,2452401-2452809,2454136-2454263,
           2455287-2455436,2455526-2455681,2455775-2455986,
           2456306-2456407,2456517-2456653,2456769-2457055
          Length = 527

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 381 ASGIPRPQAPTHFRAPRASLNSSHSKGHARLPPRRACRQTP 503
           ++G   P A  HF+   A L   ++KG    PP R     P
Sbjct: 346 STGFMYPSAVDHFKKQFAYLEEHYAKGSTAAPPERQHNSLP 386


>01_05_0050 +
           17579872-17580103,17580206-17580262,17581178-17581413,
           17581509-17581637,17581752-17581811,17582088-17582158,
           17582568-17582673,17582753-17582791
          Length = 309

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 179 DNGSTHALYLETIVEETSDDLRSEKSSGGTWLSDSDADSVIHV 307
           D+G      LE +VE+ S   +SE SSG   + +  ADS  H+
Sbjct: 61  DSGEEQEEELEPVVEQESSGYQSEYSSGND-VDEPSADSDEHI 102


>10_01_0204 + 2199778-2200835,2201212-2201311
          Length = 385

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = -3

Query: 506 RGSLATGSARREPRMTFRVTRIERGSRSAKVSRSLRARNPARGVVASPDKP 354
           RG   + +AR   R++    R    S    V R  R R P RGVV SP  P
Sbjct: 314 RGGRESATARAGARVSRAGVRPSPASSILVVHRH-RRRRPRRGVVRSPSPP 363


>08_02_0955 + 22994266-22995630
          Length = 454

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 369 SDDAASGIPRPQAPTHFRAPRASLNSSHSKGHARLPPRRAC--RQTPSS 509
           SD  A G  R ++P+  R+P  S ++S S+  ++ PP  A     TP+S
Sbjct: 17  SDCEAGGAGRRRSPSRSRSP--SRSASPSRSRSKTPPHNAAVLSSTPAS 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,157,994
Number of Sequences: 37544
Number of extensions: 336692
Number of successful extensions: 1092
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)