Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d18
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.1  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   4.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   6.3  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 96  SAT*YTTMPSQYEEERVWDGQNHNNQYEEEGN 191
           S T ++ +    EE +  +  ++NN  +EEGN
Sbjct: 440 STTVFSNVEVVQEEAKKEESDSNNNNNKEEGN 471


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +3

Query: 219 VLNECLEKFKTPDYIMEPGIFGQLKRYFQAGGNPEQVIEQLSMNYNAVAQMANLLAEWLI 398
           VL   L+K+KT  Y+M     GQLK   Q     + V   L +    V  + N L  +L+
Sbjct: 164 VLEMLLQKYKTVTYVMT----GQLKA--QNSNLLKSVCADLCLLSECV-DLFNSLFGFLV 216

Query: 399 LGGVKVSEVQAMV 437
           L  V ++ +Q ++
Sbjct: 217 LLLVALTTLQLLI 229


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 165 YDSDHPIHVLPHT 127
           YD++HP H+  H+
Sbjct: 528 YDANHPFHLHGHS 540


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,924
Number of Sequences: 336
Number of extensions: 2964
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)