Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d18
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    28   0.95 
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    27   1.7  
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    27   1.7  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   2.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   6.7  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    25   8.9  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   8.9  

>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 195 LHFLLLHIDYYDSDHPIHVLPH 130
           +H  L H+D Y  DHPI +  H
Sbjct: 203 MHRFLFHLDEYTPDHPIFLTMH 224


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 387 EWLILGGVKVSEVQAMVENHLKDMILKTFDPKK 485
           ++L   GV + + Q     + KD+I   FDPKK
Sbjct: 127 KFLFKQGVSLEDCQRFARENAKDIIAVGFDPKK 159


>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 168 NQYEEEGNEDVIENPEEVLNECLEKFKTPDYIMEPGIFGQL 290
           N  ++ GNE   E P   L+   +++K P  I+EP I   L
Sbjct: 43  NSPKQTGNETPDETPSTPLSNNKKRYKKPLTILEPHILNLL 83


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 441 NHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPD 596
           N L+ ++LK  +    DT++T    T  W+ +     +  S  Y + +E+ D
Sbjct: 547 NFLQSIVLKALNNMANDTLYTSSNVTQYWVRDDGYDSSPYSFAYFVQQEWSD 598


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 244 LKLQTTLWNLVFLVSLKDTSKLVEIQSKL 330
           +KL T   N VF+ S K T+KL + QSKL
Sbjct: 540 VKLSTPKNNDVFIFSSKITNKLNDDQSKL 568


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 174 YEEEGNEDVIE-NPEEVLNECLEKFKTPDYIMEPGIFGQLKRYFQAGGNPEQVIEQLSMN 350
           Y+E    D+ E     +LN  ++ FK    + +  ++ +   Y Q      Q +E+L  +
Sbjct: 375 YDEIEISDMSELKYSNLLNNSMKGFKGQSSVSD--LYSERLYYKQKYEQTCQEVERLQRS 432

Query: 351 YNAVAQMANL 380
           YN V + ANL
Sbjct: 433 YNHVMEEANL 442


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 330 IEQLSMNYNAVAQMANLLAEWLILGGVKVSEVQAMVENHLKDMILKTFDPKKADTIFTEE 509
           I QL   Y+A+      L E+    G+ + E       H +++ILK F PK+  T +T+ 
Sbjct: 186 ISQLPPLYSALHIQGKRLYEYA-REGIPLPESIKARSMHCEELILKDFIPKEEHT-YTDP 243

Query: 510 GE 515
            E
Sbjct: 244 DE 245


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 301 SKLVEIQSKLLNNC 342
           S+L+++QSKLLN C
Sbjct: 697 SRLLKVQSKLLNTC 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,286
Number of Sequences: 5004
Number of extensions: 50224
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)