Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24d18
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0985 - 7646772-7647451,7647957-7648107 34 0.080
12_01_1011 + 10292709-10292765,10293003-10293156,10294062-102941... 32 0.43
04_04_0849 - 28689098-28689188,28689373-28689503,28689850-286899... 30 1.7
03_06_0760 - 36067752-36068045,36068260-36068711,36069263-360695... 30 1.7
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 4.0
11_07_0004 - 27224300-27224505,27224548-27224907,27225523-272256... 28 5.2
09_02_0277 + 6648884-6649036,6649190-6649268,6649884-6650243,665... 28 5.2
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 28 6.9
03_02_0989 - 13006783-13007076,13007311-13007559,13010214-130103... 28 6.9
01_03_0126 + 12741397-12743022 28 6.9
10_05_0076 + 8872765-8872932,8874727-8874822,8875843-8875955,887... 27 9.2
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 27 9.2
07_03_0497 + 18777377-18777592,18777691-18778512 27 9.2
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 27 9.2
01_05_0208 - 19291953-19292552,19293027-19293134,19293231-192933... 27 9.2
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 34.3 bits (75), Expect = 0.080
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +3
Query: 372 ANLLAEWLILGGVKVSEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHP 551
A+ LA + G V + + +++NHL+ + +A T E ET + + +
Sbjct: 11 AHELASRQVGGSVNLGYTRRVLKNHLRTKRQRELMYGEAGNEATFE-ETFSTIRSKVHKQ 69
Query: 552 TWRSLIYRLAEEYPDCLMLN 611
TW + IY++ E++ +C M N
Sbjct: 70 TWLNSIYKVKEKWAECYMRN 89
>12_01_1011 +
10292709-10292765,10293003-10293156,10294062-10294183,
10294288-10294495,10294644-10294789,10294920-10295226,
10295666-10296117,10296388-10296678
Length = 578
Score = 31.9 bits (69), Expect = 0.43
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = +3
Query: 402 GGVKVSEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLA 581
GGV V +V A E L+D L+ D K A EEG P T + T I
Sbjct: 409 GGVAVIKVGAATETELEDRQLRIEDAKNATFAAIEEGIVPGGGTAYVHLSTTVPAIKETI 468
Query: 582 EEYPDCL 602
E++ + L
Sbjct: 469 EDHDERL 475
>04_04_0849 -
28689098-28689188,28689373-28689503,28689850-28689956,
28692318-28692396,28692583-28692678,28692777-28693049,
28693139-28693285,28693381-28693723,28693784-28693995
Length = 492
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +3
Query: 312 GNPEQVIEQLSMNYNAVAQMANLLAEWL------ILGGVKVSEVQAMVENHLKDMILKTF 473
G+P V +N+ Q L W ILG V E Q + +LK+M+L+ F
Sbjct: 88 GHPVVVSADEELNHMVFQQEGQLFQSWYPDSFVEILGKDNVGEQQGAMFRYLKNMVLRYF 147
Query: 474 DPK 482
P+
Sbjct: 148 GPE 150
>03_06_0760 -
36067752-36068045,36068260-36068711,36069263-36069569,
36069719-36069864,36069989-36070196,36070339-36070460,
36070621-36070789,36070875-36070931
Length = 584
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 402 GGVKVSEVQAMVENHLKDMILKTFDPKKADTIFTEEGETP 521
GGV V +V A E L+D L+ D K A EEG P
Sbjct: 414 GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVP 453
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 126 QYEEERVWDGQNHNNQYEEEGNEDVIENPE 215
++E E D N N QY+E NED I+N E
Sbjct: 2315 EHETENASD-INQNRQYQEATNEDAIDNIE 2343
>11_07_0004 -
27224300-27224505,27224548-27224907,27225523-27225601,
27225755-27225907
Length = 265
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 411 KVSEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEY 590
K+SEVQA D + D + EE + + ++ TW IY++ E++
Sbjct: 62 KISEVQAFEIEMANDSEFSSCMYDHDDKVKFEEAFDA--MRKKVQKQTWLDSIYKVREKW 119
Query: 591 PDCLMLN-FTI 620
+C M + FT+
Sbjct: 120 AECYMRDVFTL 130
>09_02_0277 +
6648884-6649036,6649190-6649268,6649884-6650243,
6650286-6650491
Length = 265
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 411 KVSEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEY 590
K+SEVQA D + D + EE + + ++ TW IY++ E++
Sbjct: 62 KISEVQAFEIEMANDSEFSSCMYDHDDKVKFEEAFDA--MRKKVQKQTWLDSIYKVREKW 119
Query: 591 PDCLMLN-FTI 620
+C M + FT+
Sbjct: 120 AECYMRDVFTL 130
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 396 ILGGVKVSEVQAMVENHLKDMILKTFDPKKADTIFTEEG 512
+ GGV V +V A E LK+ L+ D A EEG
Sbjct: 427 LAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 465
>03_02_0989 -
13006783-13007076,13007311-13007559,13010214-13010349,
13010777-13010995,13013796-13014174,13014365-13014496,
13015625-13015667
Length = 483
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 57 LIKSNKYYIL*KLSAT*YTTMPSQYEEERVWDGQNHNNQYEEEGNEDVIENPEEVLN 227
L KYYI + A Y + Y +E VW QN+ ++E + +I + +L+
Sbjct: 289 LKSEEKYYITYAVKA--YQRLCKSYLQEAVWFHQNYIPSFQEHLDVSIISSGSSMLS 343
>01_03_0126 + 12741397-12743022
Length = 541
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 339 LSMNYNAVAQMANLLAEWLILG 404
LS+ YNAVA++ + + WL++G
Sbjct: 366 LSVAYNAVAELPSSILAWLLMG 387
>10_05_0076 +
8872765-8872932,8874727-8874822,8875843-8875955,
8876078-8876144,8876246-8876338,8876496-8876648,
8876761-8876849,8876976-8877081,8877178-8877265,
8877375-8877493,8877626-8877787,8877917-8878113,
8878229-8878317,8878409-8878518,8878622-8878735,
8878990-8879097,8879182-8879784
Length = 824
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 147 WDGQN-HNNQYEEEGNEDVIENPEEVLN 227
W+G H QY EGN D+I +E+ N
Sbjct: 79 WNGHEPHRRQYNFEGNYDIIRFFKEIQN 106
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 132 EEERVWDGQNHNNQYEEEGNEDVIENPEE 218
EE+ D + + N EE+GNE+ ++ +E
Sbjct: 187 EEQPAQDRRENGNDIEEDGNEEEVDGGDE 215
>07_03_0497 + 18777377-18777592,18777691-18778512
Length = 345
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 123 SQYEEERVWDGQNHNNQYEEEGNE 194
S ++ERV DG++H+ + +EG +
Sbjct: 163 SSIDDERVVDGEDHDEVFNQEGGD 186
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 402 GGVKVSEVQAMVENHLKDMILKTFDPKKADTIFTEEG 512
GGV V +V A E LK+ L+ D A EEG
Sbjct: 443 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 479
>01_05_0208 -
19291953-19292552,19293027-19293134,19293231-19293344,
19293464-19293573,19293720-19293808,19293942-19294138,
19294241-19294402,19294501-19294619,19294739-19294826,
19294911-19295016,19295157-19295245,19295351-19295503,
19295631-19295723,19295823-19295889,19296217-19296329,
19296453-19296548,19297963-19298139
Length = 826
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 147 WDGQN-HNNQYEEEGNEDVIENPEEVLN 227
W+G H QY EGN DV+ +E+ N
Sbjct: 82 WNGHEPHRRQYNFEGNYDVVRFFKEIQN 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,745,579
Number of Sequences: 37544
Number of extensions: 281322
Number of successful extensions: 764
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -