Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24d18
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 33 0.17
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81557-1|CAB04535.1| 343|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 31 0.88
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 31 0.88
Z70213-5|CAA94174.1| 256|Caenorhabditis elegans Hypothetical pr... 30 1.2
U23412-4|AAK21468.3| 697|Caenorhabditis elegans Ubiquitin-like ... 28 4.7
AB095020-1|BAC22612.1| 697|Caenorhabditis elegans similar to SU... 28 4.7
Z81044-12|CAB02811.2| 527|Caenorhabditis elegans Hypothetical p... 28 6.2
U58734-3|AAO91673.1| 326|Caenorhabditis elegans Choline kinase ... 28 6.2
U58734-2|AAB52502.1| 342|Caenorhabditis elegans Choline kinase ... 28 6.2
AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical... 28 6.2
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 33.1 bits (72), Expect = 0.17
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +3
Query: 57 LIKSNKYYIL*KLSAT*YTTMPSQYEEERVWDGQNHNNQY----EEEGNEDVIENPEEVL 224
L++SN+Y + Y + Q E RV D H++ Y EE+G + +E L
Sbjct: 457 LLESNRYDMSTTKGRNQYLSA-IQMENNRVVDKHMHSSAYKLLIEEDGRRRKRKPKDEAL 515
Query: 225 NECLEKFKTPDYIMEPGIFGQLKRYFQAGGNPEQ 326
K +TP ++EP +F + F + P+Q
Sbjct: 516 LGVAAKVRTPRKVLEPPLFAPTR--FISSSTPKQ 547
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 33.1 bits (72), Expect = 0.17
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +3
Query: 57 LIKSNKYYIL*KLSAT*YTTMPSQYEEERVWDGQNHNNQY----EEEGNEDVIENPEEVL 224
L++SN+Y + Y + Q E RV D H++ Y EE+G + +E L
Sbjct: 457 LLESNRYDMSTTKGRNQYLSA-IQMENNRVVDKHMHSSAYKLLIEEDGRRRKRKPKDEAL 515
Query: 225 NECLEKFKTPDYIMEPGIFGQLKRYFQAGGNPEQ 326
K +TP ++EP +F + F + P+Q
Sbjct: 516 LGVAAKVRTPRKVLEPPLFAPTR--FISSSTPKQ 547
>Z81557-1|CAB04535.1| 343|Caenorhabditis elegans Hypothetical
protein F59A1.3 protein.
Length = 343
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 384 AEWLILGGVKVSEVQAMVENHLKDMILKTFDPKKAD 491
AEWL+LG SE +++ H++D +L F+ + D
Sbjct: 142 AEWLVLGVYMASE-NEIIDEHIRDTMLTNFNLSRLD 176
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical protein
F26A3.8 protein.
Length = 1601
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 204 ENPEEVLNECLEKFKTPDYIMEPGIFGQLKRYFQAGGNPEQVIEQLSMNYN 356
ENPE + + + ++P Y+ P + G+L R FQA N ++ E+ YN
Sbjct: 1064 ENPERIPDFHMGNERSPMYV-SPRLCGKLFREFQAIDNVIKISEERDEQYN 1113
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 204 ENPEEVLNECLEKFKTPDYIMEPGIFGQLKRYFQAGGNPEQVIEQLSMNYN 356
ENPE + + + ++P Y+ P + G+L R FQA N ++ E+ YN
Sbjct: 1064 ENPERIPDFHMGNERSPMYV-SPRLCGKLFREFQAIDNVIKISEERDEQYN 1113
>Z70213-5|CAA94174.1| 256|Caenorhabditis elegans Hypothetical
protein ZK930.6 protein.
Length = 256
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 186 GNEDVIENPEEVLNECLEKFKTPDYIMEPGI--FGQLKRYF 302
GN + +E+ E++ EC+EK T +M PGI F +L +F
Sbjct: 188 GNVEAVEDLVEMVQECIEKGHTA--VMVPGISSFAELSSHF 226
>U23412-4|AAK21468.3| 697|Caenorhabditis elegans Ubiquitin-like
protease protein 1 protein.
Length = 697
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 132 EEERVWDGQNHNNQYEEEGNEDV---IENPEEVLNECLEKFKTPDYIMEPGIFGQLKRYF 302
EE R+ +G H +Q + EDV +E + +EK K D++ P L
Sbjct: 428 EEARIREG--HRSQTRGDRLEDVRKRLELQGIAIRPKVEKKKVDDFMALPDAADALVERA 485
Query: 303 QAGGNP-EQVIEQLSM 347
+GGNP EQ ++ S+
Sbjct: 486 WSGGNPNEQFVDAFSI 501
>AB095020-1|BAC22612.1| 697|Caenorhabditis elegans similar to
SUMO-1-specific protease protein.
Length = 697
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 132 EEERVWDGQNHNNQYEEEGNEDV---IENPEEVLNECLEKFKTPDYIMEPGIFGQLKRYF 302
EE R+ +G H +Q + EDV +E + +EK K D++ P L
Sbjct: 428 EEARIREG--HRSQTRGDRLEDVRKRLELQGIAIRPKVEKKKVDDFMALPDAADALVERA 485
Query: 303 QAGGNP-EQVIEQLSM 347
+GGNP EQ ++ S+
Sbjct: 486 WSGGNPNEQFVDAFSI 501
>Z81044-12|CAB02811.2| 527|Caenorhabditis elegans Hypothetical
protein C30H6.5 protein.
Length = 527
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 162 HNNQYEEEGNEDVIENPEEVLNECLEK 242
H+N++ E+ +IEN ++V NECL K
Sbjct: 84 HSNEFLEKSGNVLIENIDDV-NECLRK 109
>U58734-3|AAO91673.1| 326|Caenorhabditis elegans Choline kinase c
protein 1, isoformb protein.
Length = 326
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 195 DVIENPEEVLNECLEKFKTPDYIMEPGIFGQLKRYFQAGGNPEQVIEQL-SMNYNAVAQM 371
D + E+L + ++K+P+ E G + F AG E VI ++ N N V
Sbjct: 20 DCENSAREILTKLRPEWKSPEITFEYFSVGITNKIFSAGFGTEHVIFRVFGHNTNKVIDR 79
Query: 372 ANLLAEW 392
N + W
Sbjct: 80 ENEVIAW 86
>U58734-2|AAB52502.1| 342|Caenorhabditis elegans Choline kinase c
protein 1, isoforma protein.
Length = 342
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 195 DVIENPEEVLNECLEKFKTPDYIMEPGIFGQLKRYFQAGGNPEQVIEQL-SMNYNAVAQM 371
D + E+L + ++K+P+ E G + F AG E VI ++ N N V
Sbjct: 20 DCENSAREILTKLRPEWKSPEITFEYFSVGITNKIFSAGFGTEHVIFRVFGHNTNKVIDR 79
Query: 372 ANLLAEW 392
N + W
Sbjct: 80 ENEVIAW 86
>AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical
protein Y38E10A.17 protein.
Length = 586
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 207 NPEEVLNECLEKFKTPDYIMEPGIFGQL 290
N EE + +E TPD++M PGI G +
Sbjct: 114 NDEEEEEDKIEGAVTPDFVMTPGIGGAI 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,217,184
Number of Sequences: 27780
Number of extensions: 268886
Number of successful extensions: 844
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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