Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d18
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.8  

>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 123 SQYEEERVWDGQNHNNQYEEEGNED 197
           S+YE+ R  DG ++ N  E   + D
Sbjct: 232 SRYEDSRHEDGNSYRNDGERSCSRD 256


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 20  KNPTIVISSSNCFDQI**ILYFI 88
           K+PTI++    CF+ +  I+ F+
Sbjct: 71  KHPTIIMPQDVCFNDLKFIIEFV 93



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 135 EERVWDGQNHNNQYEEEGNED 197
           E R  D ++++   EEE NE+
Sbjct: 167 EPRATDSRHYDRYKEEESNEN 187


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 427 WTSLTLTPPRISHSANKLAI 368
           W+S T T   + HS NK+ I
Sbjct: 222 WSSKTETNATVLHSINKVII 241


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 550 GCSIISVSQAGVSPSSVNIVSAFLGS 473
           G + ++V +    PSS+N++S  +G+
Sbjct: 78  GMTFVTVPRYKGVPSSLNVISEKIGN 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,294
Number of Sequences: 438
Number of extensions: 3407
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)