Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d17
         (382 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.19 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   1.0  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    20   9.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.19
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 380 FFFTCSYNFYCSKI*YYGQLIVHLIVFN 297
           FF  C Y FYC+ I +   L+  L +++
Sbjct: 141 FFLLCIYYFYCAFIIFTVHLLFLLCIYH 168



 Score = 21.4 bits (43), Expect = 3.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 377 FFTCSYNFYCSKI*YYGQLI--VHLIVFNVSL 288
           F  C Y+F+C+ I +   L+     I FN+ L
Sbjct: 162 FLLCIYHFFCAFIIFTMHLLFCCAFIFFNMHL 193



 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 377 FFTCSYNFYCSKI 339
           F  C Y FYC+ I
Sbjct: 281 FLLCIYYFYCALI 293


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -1

Query: 361 IIFIVVRFDIMAN*LYIL*FLMLASN 284
           ++FI + F ++   LY+  +++L +N
Sbjct: 218 LVFITINFVVLLGDLYVTLYIILTNN 243


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 152 ELSNLPPLRIRNTNQSYSK 96
           ++  + P+  +N+N +YSK
Sbjct: 18  KILGIAPISYKNSNVNYSK 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,195
Number of Sequences: 336
Number of extensions: 1380
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7908675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)