Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d17
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    24   7.0  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    24   9.3  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    24   9.3  

>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 161 IPYE-LSNLPPLRIRNTNQSYSKHIGWR 81
           I YE LS  PP    N N+++S    WR
Sbjct: 432 IMYECLSGFPPFSGSNVNETWSNLKNWR 459


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 140 LPPLRIRNTNQSYSKH 93
           LPPL ++NT Q+ + H
Sbjct: 608 LPPLHLKNTTQTNNAH 623


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 245 KSDQKIYLLKLQISELTLMLT 183
           KSDQK+  LKL I   TL +T
Sbjct: 550 KSDQKVKPLKLIIMSATLRVT 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,970
Number of Sequences: 5004
Number of extensions: 19608
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)