Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d17
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    26   8.7  

>09_06_0371 + 22615809-22617431,22618312-22618422,22619361-22619453,
            22619562-22619661,22619754-22619834,22620774-22621047,
            22621254-22622069,22622921-22623029,22623509-22623602,
            22623881-22623939,22624150-22624197
          Length = 1135

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 149  LSNLPPLRIRNTNQSYSKHIGWRAISIHY 63
            L N PP     TN S   + GW  +S +Y
Sbjct: 1087 LINFPPTYKYETNSSVIAYYGWERVSSNY 1115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,027,158
Number of Sequences: 37544
Number of extensions: 97316
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)