Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d05
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    33   0.057
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    31   0.13 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    28   1.2  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.8  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   3.8  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   8.7  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 32.7 bits (71), Expect = 0.057
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +3

Query: 405 KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDY 584
           +L  S  +L ++      S  S  S L+ +  +E +    +  V++ CE  F  +    Y
Sbjct: 144 ELNFSTEELSSFDTTLLNSDTSKLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSY 203

Query: 585 LSGEFLDEQYKGQRD-LAGKASTLKKMMDK 671
           L      E  KG+ D L  + + LK+ +DK
Sbjct: 204 LKENLKSELRKGRLDELMCENTALKEKIDK 233


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 552 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM 665
           S   DYHL++ L      E YK QR   GK   LK+++
Sbjct: 31  SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRIL 68


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 486 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 632
           E   +L   V N I  ++KTC +S ND  ++  DY+S +    + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 477 SALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 614
           S L+   K +S+  N IR +I   E++    H    +S  FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 548 REQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 715
           R  +Q + PG L     P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 516 RTGMQPMMPG-LQQPMAPQRTGMQPMMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQ 571



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +2

Query: 521 QHPGGHQDLREQ---LQRLPPGRLLVRG--IPRRTVQGPARPRRQGLDPQEDD-GQARRP 682
           Q PG  Q +  Q   +Q + P R  ++    P+RT   P  P+R G+ PQ     Q   P
Sbjct: 578 QMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAP 637

Query: 683 RRVHLRQETPR 715
           +R  ++   P+
Sbjct: 638 QRTGMQPMMPQ 648



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 599 PRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 715
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 637 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 676



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 599 PRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 715
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 703 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 742



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 599 PRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 715
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 560 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQ 599


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 266 NPVLSHG-GLLLDRYGEPPRLREAILRC 346
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 498 KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 611
           ++E DV  S++        +  DYH    LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 152 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 45
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,837
Number of Sequences: 5004
Number of extensions: 47039
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)