Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d04
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   1.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   4.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   6.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.0  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   8.0  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   8.0  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   8.0  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -3

Query: 412 TTECRCRMKLTGFLSIC*QNRR*SGSNPCR*G 317
           T  CRC     G       NRR + SNPC  G
Sbjct: 165 TFMCRCPPDWEGTTLSQSPNRRRASSNPCHNG 196


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 205 RPGISQNPCPSRLRLGLQIRAISYTLRSARDH 110
           R  I +   P +L LGL +   S+TL SA ++
Sbjct: 248 RGWIERGADPGKLVLGLGVYGRSFTLASASNN 279


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 214 LPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTLNDRD 333
           LP F A      ++++ERS  L  +  +CT L + +  R+
Sbjct: 317 LPKFSAAN----FFDIERSTILSVLGTACTFLIIIVQFRN 352


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 205 RPGISQNPCPSRLRLGLQIRAISYTLRSA 119
           R  I +   P ++ LGL +   ++TL SA
Sbjct: 244 RGWIQRGADPQKIALGLPVYGKTFTLSSA 272


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -2

Query: 374 PVHLLTESTVIWK*SLSLRVTLRRVQLAAISTK*NERSTSYQMPVIL 234
           P+H  +  T IW   +++  T         S K   +S S+  P+ L
Sbjct: 122 PIHTSSYMTGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINL 168


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -2

Query: 374 PVHLLTESTVIWK*SLSLRVTLRRVQLAAISTK*NERSTSYQMPVIL 234
           P+H  +  T IW   +++  T         S K   +S S+  P+ L
Sbjct: 355 PIHTSSYMTGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINL 401


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -2

Query: 374 PVHLLTESTVIWK*SLSLRVTLRRVQLAAISTK*NERSTSYQMPVIL 234
           P+H  +  T IW   +++  T         S K   +S S+  P+ L
Sbjct: 355 PIHTSSYMTGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINL 401


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 519 VIREEYVVLPRAREQPPNQIRHA 451
           +IR  +V+L R  E+  ++ +HA
Sbjct: 184 IIRNRFVILNRYIEESISKYKHA 206


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 145 LLFGALAEVVTGTGFGRCPAYPSLP 219
           ++FGA+A +    G   CP   S P
Sbjct: 41  IIFGAIATLTCIEGLRDCPRKYSTP 65


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 145 LLFGALAEVVTGTGFGRCPAYPSLP 219
           ++FGA+A +    G   CP   S P
Sbjct: 37  IIFGAIATLTCIEGLRDCPRKYSTP 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,850
Number of Sequences: 336
Number of extensions: 3211
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)