Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24d04
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 31 0.098
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 2.8
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 27 2.8
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 26 3.7
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.7
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi... 26 4.9
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.4
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 8.5
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 31.5 bits (68), Expect = 0.098
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 271 FYLVEIAASCTRLNVTLNDRDYFQITVDSVNRWTGSQ--STSYGIGIPSYNGSSVFRYKL 444
F L I +L LND + F T S+N Q S++Y +G+PS++ +F ++
Sbjct: 18 FLLNRIRTEFPQLAAVLNDPNAFATTWQSINASQLLQIPSSTYSMGMPSFSEDDLFDVEV 77
Query: 445 NNRM 456
R+
Sbjct: 78 QRRI 81
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +1
Query: 286 IAASCTRLNVTLNDRDYFQITVDSVNRWTGSQSTSYGIGIPSYNGSSVFRYKLNNRMPYL 465
I ++ + V N DY+ TV S+ + STS + P+ N ++ LN +
Sbjct: 581 IPSASSSYEVASNSSDYYSQTVSSITASGTTSSTSEIVSTPASNSNT---GSLNGTSSFN 637
Query: 466 IGRLLPGAGQ 495
+ + P + Q
Sbjct: 638 VNSVGPSSSQ 647
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 366 SVDRIDGDLEVIPVVKGDIKAGATRGYLHQVERT 265
S D + L + P KG++ + A +GY ++ R+
Sbjct: 1485 STDGLSDALNITPTKKGEVSSKAKKGYNYEKRRS 1518
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 284 R*PRVAPALMSPLTTGITSRSPSILSTDGQEAS 382
R P P+L P + GI + SP++L QE S
Sbjct: 60 RYPETPPSLPPPPSPGILATSPAVLQKHQQEDS 92
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1095
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 379 QSTSYGIGIPSYNGSSVFRYKLNNRMPYLIGRL-LPGA 489
Q+ SYGIG+ + +G ++ ++ +P L L LP A
Sbjct: 927 QAASYGIGVAAQHGGELYAEICSSALPALFKMLELPDA 964
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +1
Query: 139 IWLLFGALAEVVTGTGFGRCPAYPSLPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVT 318
+WL G + V G R A S+ DA+ +++ + +YL +++ T V
Sbjct: 299 VWLNVGVVVRVAQTLGLHRNSAMWSIGKEDAEEKARLFWYI---YYLDRVSSMMTGKPVA 355
Query: 319 LNDRDYFQI 345
D D Q+
Sbjct: 356 FQDDDIDQM 364
>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/66 (19%), Positives = 31/66 (46%)
Frame = +1
Query: 217 PNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTLNDRDYFQITVDSVNRWTGSQSTSYG 396
PN+DA+ + + ++E++ I C+ N + N + +++ + S+ G
Sbjct: 252 PNYDAEHVAAVRKDLEKANLPPRIMIDCSHGNSSKNHLNQPKVSKSIAEQIRNGDSSIVG 311
Query: 397 IGIPSY 414
+ I S+
Sbjct: 312 VMIESH 317
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 202 AYPSLPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTLNDRD 333
A PS+ + R+ IW ++++Y + + T N L D +
Sbjct: 180 AQPSIAWSEGHRIAAIWDPSQQAYYFWDTLTNTTSWNNPLEDEE 223
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/53 (26%), Positives = 20/53 (37%)
Frame = +3
Query: 111 WSRADRSV*DMALIWSPSRSRDGHGFWEMPGLPVSTEF*RTEDDRHLVRSGAF 269
W + L+ P +S + F E+P L S F E V+ G F
Sbjct: 28 WETQENLESSTPLLQEPQQSYRSNSFNELPPLSRSVTFAENEQPNEAVKLGTF 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,540
Number of Sequences: 5004
Number of extensions: 52028
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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