Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24d04
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1346 - 35831261-35831371,35831609-35831779,35831850-358318...    29   3.7  
03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289...    28   6.5  
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702...    27   8.7  
06_03_1233 + 28584321-28585160,28585215-28585457                       27   8.7  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    27   8.7  
04_03_0643 + 18328807-18331969,18332560-18332627                       27   8.7  
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131...    27   8.7  

>02_05_1346 -
           35831261-35831371,35831609-35831779,35831850-35831888,
           35831987-35832049,35832616-35832679,35832709-35832778,
           35832866-35832934,35833101-35833186,35833670-35833800,
           35834021-35834083,35834166-35834211,35834542-35834618,
           35834690-35834724,35835480-35835542,35835632-35835719,
           35836027-35836077,35836201-35836269
          Length = 431

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 400 GIP--SYNGSSVFRYKLNNRMPYLIG 471
           GIP  +Y G  VFRYK + R  YL+G
Sbjct: 397 GIPRTAYKGVVVFRYKSSRRRIYLVG 422


>03_01_0372 +
           2895807-2895883,2896557-2896647,2896741-2896839,
           2897220-2897268,2897269-2897405,2898027-2898248,
           2898335-2898488,2898574-2898723,2898890-2898978,
           2899632-2899844,2900180-2900314,2900461-2900640,
           2901004-2901111,2901215-2901340,2901421-2901550,
           2901637-2901729,2902067-2902192,2902294-2902304
          Length = 729

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +1

Query: 280 VEIAASCTRLNVTLNDRDYFQITVDSVNRWTGSQSTSYGIGIPSYNGSSVFRYKLNNRMP 459
           VE+   C +L +  N+        D V     SQ   Y   +  YNG+ +   +      
Sbjct: 51  VELQPECKKLKLKKNNWSCESYRFDEVFSENASQKRVYESVLEGYNGTVMAYGQTGTGKT 110

Query: 460 YLIGRL 477
           Y +GRL
Sbjct: 111 YTVGRL 116


>12_02_1133 -
           26368323-26369457,26369556-26369635,26370145-26370201,
           26370508-26370601,26371006-26371092,26371179-26371268,
           26371396-26371649
          Length = 598

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 194 LPKPVPVTTSARAPNKSHILYAAISSRPLISRQRYSQTVRLQR 66
           LPKP P  + +R P  + +L A  +SR  +S        R  R
Sbjct: 418 LPKPKPYESQSRPPTAAELLRAYCASRGHVSHAGLPDETRAAR 460


>06_03_1233 + 28584321-28585160,28585215-28585457
          Length = 360

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 199 PAYPSLPNFDAQRMTGIWYEV 261
           P+YPSLP F A+R++   +EV
Sbjct: 270 PSYPSLPLFGAERLSRDGFEV 290


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 250 KCRSSSVRQNSVE--TGRPGISQNPCPSRLRLGLQIRAISYTLRSARDHSSHGNDTRRLC 77
           KC +   + NS++  T  P +S++   S++ L  +I +I   LRS+      G    R+ 
Sbjct: 284 KCMTIEEKLNSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVS 343

Query: 76  GCS 68
           GC+
Sbjct: 344 GCN 346


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 187 FGRCPAYPSLPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTLNDRDYFQ 342
           F  C  YP    FD + +  IW  V + +   E A+SC   N  +N R +FQ
Sbjct: 486 FSICALYPKDHKFDKEFLADIW--VAQGYVEAEDASSC--FNDLVN-RSFFQ 532


>01_05_0777 +
           25110356-25110662,25112569-25112789,25112880-25113127,
           25113274-25113664,25113751-25114155,25115260-25115366,
           25115833-25116170,25116206-25116486,25116645-25116889,
           25116998-25117382,25117459-25117884
          Length = 1117

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 26/83 (31%), Positives = 34/83 (40%)
 Frame = +2

Query: 191 GDARPTRLYRILTHRG*PAFGTKWSVRSTWWR*PRVAPALMSPLTTGITSRSPSILSTDG 370
           GD RP  L          A+    ++   WWR  R+  AL +    G   RSP   + D 
Sbjct: 9   GDERPLMLVWAAVAGAVLAWCAVRAMEWAWWRPRRLERALRAQGLRGTPYRSP---AGDA 65

Query: 371 QEASQLHTASAFRRTMGRQCFDI 439
               QL +A A  RTM   C D+
Sbjct: 66  PLNVQL-SAEARARTMPLGCHDV 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,630,501
Number of Sequences: 37544
Number of extensions: 390890
Number of successful extensions: 1072
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)