Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24d04
(603 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M16696-1|AAA51764.1| 189|Homo sapiens APOD protein. 54 5e-07
J02611-1|AAB59517.1| 189|Homo sapiens APOD protein. 54 5e-07
CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein. 54 5e-07
CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein. 54 5e-07
BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein. 54 5e-07
BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein. 54 5e-07
BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein. 54 5e-07
S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein. 38 0.036
AK126303-1|BAC86520.1| 527|Homo sapiens protein ( Homo sapiens ... 32 1.4
>M16696-1|AAA51764.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 53.6 bits (123), Expect = 5e-07
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Frame = +1
Query: 148 LFGALAEVVTGTGF--GRCPAYPSLPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTL 321
LFGA AE G F G+CP P NFD + G WYE+E+ E C + N +L
Sbjct: 14 LFGA-AE---GQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSL 68
Query: 322 NDRDYFQITVDSVNRWTGSQSTSYGIGIP-SYNGSSVFRYKLNNRMPYLIGRLLPGAGQY 498
+ ++ ++ R G+ + G P + + K + MP + Y
Sbjct: 69 MENGKIKV-LNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP---------SAPY 118
Query: 499 NILFTDYDQFALVWSC-XXVSLAHSDRIWVLGR 594
IL TDY+ +ALV+SC + L H D W+L R
Sbjct: 119 WILATDYENYALVYSCTCIIQLFHVDFAWILAR 151
>J02611-1|AAB59517.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 53.6 bits (123), Expect = 5e-07
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Frame = +1
Query: 148 LFGALAEVVTGTGF--GRCPAYPSLPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTL 321
LFGA AE G F G+CP P NFD + G WYE+E+ E C + N +L
Sbjct: 14 LFGA-AE---GQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSL 68
Query: 322 NDRDYFQITVDSVNRWTGSQSTSYGIGIP-SYNGSSVFRYKLNNRMPYLIGRLLPGAGQY 498
+ ++ ++ R G+ + G P + + K + MP + Y
Sbjct: 69 MENGKIKV-LNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP---------SAPY 118
Query: 499 NILFTDYDQFALVWSC-XXVSLAHSDRIWVLGR 594
IL TDY+ +ALV+SC + L H D W+L R
Sbjct: 119 WILATDYENYALVYSCTCIIQLFHVDFAWILAR 151
>CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 53.6 bits (123), Expect = 5e-07
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Frame = +1
Query: 148 LFGALAEVVTGTGF--GRCPAYPSLPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTL 321
LFGA AE G F G+CP P NFD + G WYE+E+ E C + N +L
Sbjct: 14 LFGA-AE---GQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSL 68
Query: 322 NDRDYFQITVDSVNRWTGSQSTSYGIGIP-SYNGSSVFRYKLNNRMPYLIGRLLPGAGQY 498
+ ++ ++ R G+ + G P + + K + MP + Y
Sbjct: 69 MENGKIKV-LNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP---------SAPY 118
Query: 499 NILFTDYDQFALVWSC-XXVSLAHSDRIWVLGR 594
IL TDY+ +ALV+SC + L H D W+L R
Sbjct: 119 WILATDYENYALVYSCTCIIQLFHVDFAWILAR 151
>CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 53.6 bits (123), Expect = 5e-07
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Frame = +1
Query: 148 LFGALAEVVTGTGF--GRCPAYPSLPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTL 321
LFGA AE G F G+CP P NFD + G WYE+E+ E C + N +L
Sbjct: 14 LFGA-AE---GQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSL 68
Query: 322 NDRDYFQITVDSVNRWTGSQSTSYGIGIP-SYNGSSVFRYKLNNRMPYLIGRLLPGAGQY 498
+ ++ ++ R G+ + G P + + K + MP + Y
Sbjct: 69 MENGKIKV-LNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP---------SAPY 118
Query: 499 NILFTDYDQFALVWSC-XXVSLAHSDRIWVLGR 594
IL TDY+ +ALV+SC + L H D W+L R
Sbjct: 119 WILATDYENYALVYSCTCIIQLFHVDFAWILAR 151
>BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 53.6 bits (123), Expect = 5e-07
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Frame = +1
Query: 148 LFGALAEVVTGTGF--GRCPAYPSLPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTL 321
LFGA AE G F G+CP P NFD + G WYE+E+ E C + N +L
Sbjct: 14 LFGA-AE---GQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSL 68
Query: 322 NDRDYFQITVDSVNRWTGSQSTSYGIGIP-SYNGSSVFRYKLNNRMPYLIGRLLPGAGQY 498
+ ++ ++ R G+ + G P + + K + MP + Y
Sbjct: 69 MENGKIKV-LNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP---------SAPY 118
Query: 499 NILFTDYDQFALVWSC-XXVSLAHSDRIWVLGR 594
IL TDY+ +ALV+SC + L H D W+L R
Sbjct: 119 WILATDYENYALVYSCTCIIQLFHVDFAWILAR 151
>BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 53.6 bits (123), Expect = 5e-07
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Frame = +1
Query: 148 LFGALAEVVTGTGF--GRCPAYPSLPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTL 321
LFGA AE G F G+CP P NFD + G WYE+E+ E C + N +L
Sbjct: 14 LFGA-AE---GQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSL 68
Query: 322 NDRDYFQITVDSVNRWTGSQSTSYGIGIP-SYNGSSVFRYKLNNRMPYLIGRLLPGAGQY 498
+ ++ ++ R G+ + G P + + K + MP + Y
Sbjct: 69 MENGKIKV-LNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP---------SAPY 118
Query: 499 NILFTDYDQFALVWSC-XXVSLAHSDRIWVLGR 594
IL TDY+ +ALV+SC + L H D W+L R
Sbjct: 119 WILATDYENYALVYSCTCIIQLFHVDFAWILAR 151
>BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 53.6 bits (123), Expect = 5e-07
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Frame = +1
Query: 148 LFGALAEVVTGTGF--GRCPAYPSLPNFDAQRMTGIWYEVERSFYLVEIAASCTRLNVTL 321
LFGA AE G F G+CP P NFD + G WYE+E+ E C + N +L
Sbjct: 14 LFGA-AE---GQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSL 68
Query: 322 NDRDYFQITVDSVNRWTGSQSTSYGIGIP-SYNGSSVFRYKLNNRMPYLIGRLLPGAGQY 498
+ ++ ++ R G+ + G P + + K + MP + Y
Sbjct: 69 MENGKIKV-LNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP---------SAPY 118
Query: 499 NILFTDYDQFALVWSC-XXVSLAHSDRIWVLGR 594
IL TDY+ +ALV+SC + L H D W+L R
Sbjct: 119 WILATDYENYALVYSCTCIIQLFHVDFAWILAR 151
>S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein.
Length = 98
Score = 37.5 bits (83), Expect = 0.036
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 478 LPGAGQYNILFTDYDQFALVWSC-XXVSLAHSDRIWVLGR 594
+P A Y IL TDY+ +ALV+SC + L H D W+L R
Sbjct: 22 MPSA-PYWILATDYENYALVYSCTCIIQLFHVDFAWILAR 60
>AK126303-1|BAC86520.1| 527|Homo sapiens protein ( Homo sapiens
cDNA FLJ44324 fis, clone TRACH3002168, highly similar
to Cell surface glycoprotein MUC18 precursor. ).
Length = 527
Score = 32.3 bits (70), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 289 LSPPSRTNAPLRTKCRSSSVRQNSVETGRPGISQ 188
L+P S T L T S R NS TG+PG+++
Sbjct: 471 LTPDSNTTTGLSTSTASPHTRANSTSTGKPGLAR 504
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,084,353
Number of Sequences: 237096
Number of extensions: 2114879
Number of successful extensions: 4234
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4224
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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