Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24d04
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr... 31 0.63
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep... 30 1.5
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue... 30 1.5
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 29 2.6
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 29 2.6
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 29 2.6
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family... 28 5.9
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 28 5.9
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF003739-5|AAK84629.2| 422|Caenorhabditis elegans Temporarily a... 28 5.9
Z99171-5|CAB16311.1| 280|Caenorhabditis elegans Hypothetical pr... 27 7.8
>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical protein
K04D7.5b protein.
Length = 1287
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -2
Query: 266 RSTSYQMPVILCASKFGRDG*AGHLPKPVPVTTSARAPNKSHI 138
+STS Q P+ C S FG + LP+ +PV + R P +S I
Sbjct: 916 QSTSCQRPMGYC-SDFGEFSNSSSLPEEIPVPSHQRTPQESAI 957
>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical protein
K04D7.5a protein.
Length = 1338
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -2
Query: 266 RSTSYQMPVILCASKFGRDG*AGHLPKPVPVTTSARAPNKSHI 138
+STS Q P+ C S FG + LP+ +PV + R P +S I
Sbjct: 916 QSTSCQRPMGYC-SDFGEFSNSSSLPEEIPVPSHQRTPQESAI 957
>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
homolog protein.
Length = 1846
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +1
Query: 319 LNDRDYFQITVDSVN--RWTGSQSTSYGIGIPSYNGS 423
LND DY + + S++ R TG+ S+SYG+ +++G+
Sbjct: 1708 LNDDDYVEKEISSMDTRRSTGASSSSYGVPQTNWSGN 1744
>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
formation protein 2 protein.
Length = 1843
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +1
Query: 319 LNDRDYFQITVDSVN--RWTGSQSTSYGIGIPSYNGS 423
LND DY + + S++ R TG+ S+SYG+ +++G+
Sbjct: 1705 LNDDDYVEKEISSMDTRRSTGASSSSYGVPQTNWSGN 1741
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 431 NTDDPLYDGMPMPYEVDWLPVHLLTESTVI 342
+T+DP P+ Y V WL VHLL + V+
Sbjct: 798 STEDP-NQSPPLKYSVQWLRVHLLLKLIVV 826
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 431 NTDDPLYDGMPMPYEVDWLPVHLLTESTVI 342
+T+DP P+ Y V WL VHLL + V+
Sbjct: 798 STEDP-NQSPPLKYSVQWLRVHLLLKLIVV 826
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 431 NTDDPLYDGMPMPYEVDWLPVHLLTESTVI 342
+T+DP P+ Y V WL VHLL + V+
Sbjct: 798 STEDP-NQSPPLKYSVQWLRVHLLLKLIVV 826
>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
protein 5, isoformb protein.
Length = 1306
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 322 NDRDYFQITVDSVNRWTGSQSTSYGIGIPSYNGSSVFRYKLNNRMPYLIGRLLPGAGQYN 501
++RD ++ V+ Q T Y I + G FRY+ M G L+PG +Y
Sbjct: 121 DERDVVKVVATDVDSGAFGQVT-YTIAQVTNGGEDKFRYETATNMLVATGNLVPGE-RYQ 178
Query: 502 ILFTDYD 522
++ D
Sbjct: 179 VVIEAID 185
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 322 NDRDYFQITVDSVNRWTGSQSTSYGIGIPSYNGSSVFRYKLNNRMPYLIGRLLPGAGQYN 501
++RD ++ V+ Q T Y I + G FRY+ M G L+PG +Y
Sbjct: 121 DERDVVKVVATDVDSGAFGQVT-YTIAQVTNGGEDKFRYETATNMLVATGNLVPGE-RYQ 178
Query: 502 ILFTDYD 522
++ D
Sbjct: 179 VVIEAID 185
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 423 RPIVRRNADAV*S*LASCPSVDRIDGDLEVIPVVKGDI 310
RP +R N D V A+ PSV+R D +V+ V G +
Sbjct: 226 RPEIRHNGDFVRPISATDPSVERYSIDKDVLKAVIGKV 263
>AF003739-5|AAK84629.2| 422|Caenorhabditis elegans Temporarily
assigned gene nameprotein 96 protein.
Length = 422
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 103 EMSGRELIAAYKIWLLFGALAEVVTGTGFGRC 198
E S REL +++L GAL +TG G+G C
Sbjct: 357 ECSCRELDEICRLYLDHGALGARLTGAGWGGC 388
>Z99171-5|CAB16311.1| 280|Caenorhabditis elegans Hypothetical
protein F47G4.5 protein.
Length = 280
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 295 SRLSPPSRTNAPLRTKCRSSSVRQNSVETGRPGISQNP 182
SRL PP + P+R + S+ VR+ E G +NP
Sbjct: 12 SRLGPPQQ---PVRRRSNSTKVRRKDAELGSVDRKRNP 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,404,183
Number of Sequences: 27780
Number of extensions: 312274
Number of successful extensions: 857
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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