Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24c22
         (201 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    24   3.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    24   3.2  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    23   4.2  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    23   4.2  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    23   5.5  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    22   9.7  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    22   9.7  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    22   9.7  

>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 103 FL*NDGMFGARSTPVTGRPGIAVP 174
           FL    + G +S P+T  P  AVP
Sbjct: 416 FLQEHSLNGTKSAPITPPPSFAVP 439


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -1

Query: 162 AGPT-RDGSGASPEHP 118
           A PT RDGS  SP+HP
Sbjct: 803 AYPTVRDGSNNSPDHP 818


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 99  LIFVKRWDVRGSLHSRHGSARHCSAAGI 182
           + ++ R DVR SLH+   S    S  G+
Sbjct: 364 ITYLNREDVRSSLHATKASTALTSGEGV 391


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 198 FF*EGRS-RRHCNAGPTRDGSGASPEHPIVLQKSV*YTGPSMRELSDIKLKRTDTTL 31
           FF E +S R + N+         + E  +++QK + Y      E+ D+K   TDT +
Sbjct: 73  FFSEKQSVRENGNSSAGEKKQKWTSEQHLLVQKIIKYKNHQYYEILDLKKTCTDTEI 129


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 147 DGSGASPEHPIVLQKSV 97
           + S  SP+HP+V+ K +
Sbjct: 809 NASAVSPDHPVVITKFI 825


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 188 RADPGGTAMPGRPVTGVERA 129
           RA PG TA+P R  T  + A
Sbjct: 49  RARPGATAVPRRSPTSPQSA 68


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 199 FFLRGPIPAALQCRADP*REWSEPRTSHRFTKISL 95
           FF R  IP+ +   +    +WSEP      TK  +
Sbjct: 325 FFNRSEIPSDITSGSPQPAKWSEPVADFPDTKCDI 359


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +2

Query: 101 DFC--KTMGCSGLAPLPSRVGPALQCRRDRPS*KK 199
           D C  K + C GL P  +     L+C    PS +K
Sbjct: 32  DMCRRKKIKCDGLRPCKNCKAGKLECTYHMPSSRK 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 854,358
Number of Sequences: 5004
Number of extensions: 13900
Number of successful extensions: 36
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)