Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24c22
         (201 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258     27   1.6  
07_01_0838 - 6811525-6812364,6813085-6813211,6813321-6813670           27   2.1  
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66...    27   2.8  
05_03_0457 + 14274533-14274879,14275575-14275605                       26   3.6  
12_02_1111 - 26157796-26160330                                         26   4.8  
11_08_0059 + 28104958-28105827                                         25   6.4  
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140...    25   6.4  
11_06_0135 - 20470247-20470906                                         25   8.4  
09_06_0150 - 21225086-21225511,21225775-21226125,21227180-212277...    25   8.4  

>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
          Length = 700

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 196 FLRGPIPAALQCRADP*REWSEPRTSHRFTKISLIYWSLNE 74
           F  G +PA + CR    R  ++P T   F KI L+    NE
Sbjct: 61  FPGGRVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANE 101


>07_01_0838 - 6811525-6812364,6813085-6813211,6813321-6813670
          Length = 438

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 112 NDGMFGARST-PVTGRPGIAVPPG 180
           N G+ GA  T PV   PG + PPG
Sbjct: 260 NSGVIGASPTLPVVQEPGTSTPPG 283


>08_01_0091 +
          664913-664985,665281-665576,667197-667311,667901-667971
          Length = 184

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -1

Query: 78 MRELSDIKLKRTDTTL 31
          M  +SDIKL RTDTTL
Sbjct: 1  MAHISDIKLIRTDTTL 16


>05_03_0457 + 14274533-14274879,14275575-14275605
          Length = 125

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 179 PGGTAMPGRPVTGVERAPNIPS 114
           PGG A P  PVTG   AP + S
Sbjct: 16  PGGEASPFAPVTGDHPAPALAS 37


>12_02_1111 - 26157796-26160330
          Length = 844

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 126 EHPIVLQKSV*YTGPSMRELSDIK 55
           E P V+QK +   GP  R L+D+K
Sbjct: 285 EQPTVVQKVIDMRGPQARVLTDLK 308


>11_08_0059 + 28104958-28105827
          Length = 289

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 169 LQCRADP*REWSEPRTSHRFTKISLIYWSLNEGTFRY*AEKNRYYTLILATRPR 8
           + C A P   W +   ++  +++ L   + +E    Y + K  YYTL++  R R
Sbjct: 211 VNCTAAPRESWEKWAAAYPASQVYLGLVASSEQDPGYLSPKPLYYTLVMYIRDR 264


>03_06_0572 +
           34812203-34812278,34812485-34813768,34813973-34814049,
           34814299-34814646
          Length = 594

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -2

Query: 179 PGGTAMPG-RPVTGVERAPNIPSFYKNQFNILVP 81
           PG   +P   P TG    PN+P  Y     + +P
Sbjct: 273 PGIVTVPSTNPATGYSNNPNLPPLYPEPTPVTMP 306


>11_06_0135 - 20470247-20470906
          Length = 219

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 182 DPGGTAMPGRPVT-GVERAPNIPSFYKNQF 96
           D    AM G P    VER P + SF +N+F
Sbjct: 134 DDVSKAMSGLPADIDVERYPKVQSFLRNKF 163


>09_06_0150 -
           21225086-21225511,21225775-21226125,21227180-21227718,
           21227813-21227929,21228038-21228290
          Length = 561

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 136 STPVTGRPGIAVPP 177
           STPVTG PG   PP
Sbjct: 503 STPVTGSPGRVQPP 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,054,892
Number of Sequences: 37544
Number of extensions: 102332
Number of successful extensions: 280
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)