Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24c22
(201 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 20 2.4
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 20 2.4
EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle pr... 20 3.2
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 20 3.2
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 19 5.6
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 19 5.6
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 19 5.6
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 19 5.6
M12598-1|AAA27733.1| 77|Apis mellifera protein ( Bee preprosec... 19 7.4
AY082691-1|AAL92482.1| 77|Apis mellifera preprosecapin protein. 19 7.4
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 19 7.4
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 18 9.8
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 103 FL*NDGMFGARSTPVT 150
F +DG+FG +PVT
Sbjct: 248 FTVHDGIFGMALSPVT 263
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 20.2 bits (40), Expect = 2.4
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = -3
Query: 160 RADP*REWSEPRTSHRFTKISLIYWSLNEGTFRY 59
R++P WSE + + L + S+N+ Y
Sbjct: 566 RSNP-TPWSEDAMTEALEAVRLGHMSINQAAIHY 598
>EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle
protein protein.
Length = 138
Score = 19.8 bits (39), Expect = 3.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 126 EHPIVLQKSV*YTGPSMRELS 64
E P+V Q S YT P +++S
Sbjct: 66 ETPVVSQGSDSYTAPDGQQVS 86
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 19.8 bits (39), Expect = 3.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 130 ARSTPVTGRPGIAVPP 177
AR+ PV+G P PP
Sbjct: 1848 ARNIPVSGSPEPPPPP 1863
Score = 18.2 bits (35), Expect = 9.8
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -1
Query: 69 LSDIKLKRTD 40
LSD+ +KRT+
Sbjct: 837 LSDLSIKRTE 846
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 19.0 bits (37), Expect = 5.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -3
Query: 145 REWSEPRTSHRFT 107
R WS PR S + T
Sbjct: 45 RSWSRPRESAQTT 57
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 19.0 bits (37), Expect = 5.6
Identities = 9/15 (60%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Frame = -3
Query: 175 AALQCRA--DP*REW 137
A L C A DP REW
Sbjct: 1331 ATLACNAVGDPTREW 1345
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 19.0 bits (37), Expect = 5.6
Identities = 9/15 (60%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Frame = -3
Query: 175 AALQCRA--DP*REW 137
A L C A DP REW
Sbjct: 1327 ATLACNAVGDPTREW 1341
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 19.0 bits (37), Expect = 5.6
Identities = 5/20 (25%), Positives = 12/20 (60%)
Frame = +3
Query: 123 VRGSLHSRHGSARHCSAAGI 182
++GS+ + G+ HC+ +
Sbjct: 189 IKGSISNIDGAEDHCNKTAV 208
>M12598-1|AAA27733.1| 77|Apis mellifera protein ( Bee
preprosecapin mRNA, complete cds. ).
Length = 77
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -2
Query: 134 RAPNIPSFYKNQFNILVP 81
R P F KN+ ++VP
Sbjct: 60 RCPPGSKFIKNRCRVIVP 77
>AY082691-1|AAL92482.1| 77|Apis mellifera preprosecapin protein.
Length = 77
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -2
Query: 134 RAPNIPSFYKNQFNILVP 81
R P F KN+ ++VP
Sbjct: 60 RCPPGSKFIKNRCRVIVP 77
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1
Query: 103 FL*NDGMFGARSTPVT 150
F DG+FG +P+T
Sbjct: 248 FTAQDGIFGMALSPMT 263
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 18.2 bits (35), Expect = 9.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 118 GMFGARSTPVTGR 156
G+ STP TGR
Sbjct: 388 GLVSGSSTPGTGR 400
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,947
Number of Sequences: 438
Number of extensions: 1258
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used: 2659293
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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