Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24c14
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    28   0.97 
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   1.7  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    27   3.0  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   3.9  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   3.9  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    26   5.2  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    26   5.2  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   6.9  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   9.1  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   9.1  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.1  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   9.1  

>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 321 VNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTE 416
           +N + + L+ ++NNF G   K     SC DTE
Sbjct: 212 LNEYYKSLSKLKNNFRGIIYKTTPYGSCNDTE 243


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 411 TEEATEKQAVQQTLDGHDWVLESNDFCIFVKPFILKKHYEVIQKYINFEN 560
           T+E  +KQA            ES   C FV P + +K  + +Q+Y+NF +
Sbjct: 208 TKENVKKQASSAGFKEIAEKQESQGLC-FVSPNVGRKFRKFLQRYLNFSD 256


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 368 RSVRKTRHGLVLRRHRRSYRKTGSSTNIRRPRLGVGK*R 484
           +S +KT+  + L +  ++YR      N R+ R G GK R
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLR 197


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 368 RSVRKTRHGLVLRRHRRSYRKTGSSTNIRRPRLGVGK*R 484
           +S +KT+  + L +  ++YR      N R+ R G GK R
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLR 197


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 558 NFFKSTDPGYINKCVQAG 611
           +   ST+P YINKCV  G
Sbjct: 3   SIISSTNPQYINKCVNNG 20


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 531 VIQKYINFENFFKSTDPGYINKCVQAGDYYYW 626
           +++  +   N F+  D  YI   +   DY YW
Sbjct: 367 ILRVLLRIRNLFEHHDVYYIYNAIVLNDYAYW 398


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 402 CEDTEEATEKQAVQQTLDGHDWVLE-SNDFCIFVKPFILKKHY 527
           C +TE+ T+     Q+ + H W  E  N+F +    F  K+H+
Sbjct: 229 CTETEQHTQTLVHFQSRNFHQWYFELVNNFNLLFYGFGSKEHF 271


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 309 LFEYVNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTEEAT 425
           L E++ + ++   +  ++FN   A  DM  S E TEEAT
Sbjct: 557 LDEFIQSGEEVEWSNFSHFNAESALADMNDSVEVTEEAT 595


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 342 LNTIRNNFNGPCAKHDMGSSCEDTEEATEKQAVQQTLDGHDWVLESN 482
           L + + N +G  AKHD+     D   + + Q++Q   D     ++SN
Sbjct: 29  LTSRKYNTHGLGAKHDIADQWWDNVFSAQLQSIQVNTDNGKVAVQSN 75


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/73 (23%), Positives = 29/73 (39%)
 Frame = +3

Query: 210 FLKDVPEDKTYEINNLQDANHLIIRNTRTGTRRLFEYVNNFQQFLNTIRNNFNGPCAKHD 389
           FL+ + +  TY  + +         N  T  R  F+     + +        + P  KH 
Sbjct: 2   FLEIILDSATYSFDRVITGKICFETNAATSPRS-FQIQLRIKGYAVYHHGFLSSPSHKHP 60

Query: 390 MGSSCEDTEEATE 428
             +S  D++EATE
Sbjct: 61  TTASASDSDEATE 73


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 475 SNTQSWPSNVC*TACFSVASSVSSQDEPMSCFAHGPLKL 359
           S  +  PSN    +  S  S VS    P SC  H P ++
Sbjct: 145 SEKEEIPSNASSISLKSQNSIVSRTSNPFSCLNHSPRQI 183


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 516 KKHYEVIQKYINFENFFKSTDPGYI-NKCVQAGDYYY 623
           K HY    K+ N++N  K   PG++  + V + D+ Y
Sbjct: 76  KIHYVSSPKHPNYKNIEKYLKPGWLFGQKVDSADFQY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,678
Number of Sequences: 5004
Number of extensions: 53820
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)