Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24c11
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    34   0.019
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    30   0.31 
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    29   0.95 
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    28   1.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.2  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    27   2.2  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    27   2.9  
SPBC216.06c |swi1||replication fork protection complex subunit S...    27   2.9  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    26   5.0  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    26   5.0  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   5.0  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    26   6.7  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   6.7  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   6.7  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   8.8  

>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
 Frame = +2

Query: 188  YSLNSTSSTEYKISDVVMTMIFLLRSEKYHSLFKL--LETTFDDYTCRPQMTQVQTDTLL 361
            YSL     +   ++  +   +  L  E Y  L  L  LE   D   C P +   Q DT+L
Sbjct: 1089 YSLLDIPESLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVD---CSPSIIDEQVDTIL 1145

Query: 362  DAVRSLLEMPSTTVDLTT-----VDIMRSSFARCF 451
            +A+R ++E+  T   L T     +D++RS+    F
Sbjct: 1146 EALRKIIELRKTEKTLKTDSDNILDLVRSALRVLF 1180


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 645 SSLFKNSESSQNGISVPLLMYCCGCNICI-FSPRSINNSSRVVRLSRC 505
           S  +++SE S+N  S   L+Y   C +C+ F    +N     V L+ C
Sbjct: 570 SDQYEDSEDSRNFPSKLYLVYLSNCPLCLKFKLSKVNQQKATVHLATC 617


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 470 YAKIVLLQNVASQRDKRTTLEELLIERGEKIQMLQPQQYINSGTEIPFCDDSEFLNRL 643
           +++I    N+ S  DKR   E+  +     +Q+    Q++ +  +IPF   S F+ RL
Sbjct: 51  FSQINAAYNILSNDDKRKWHEKDYLRNQYSVQIEDVLQHLQTIEKIPFESTSAFVERL 108


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +2

Query: 326 PQMTQVQTDTLLDAVRSLLEMPSTTVDLTTVDIMRSSFARCFNSPIMKYAKIV 484
           PQ+T++    + D VR        T+D ++++I +S+F        +K A ++
Sbjct: 182 PQVTELLATVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLI 234


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 596  GTEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANTM 703
            GT I      E  N L   ID  PLSR Y+NA  T+
Sbjct: 1198 GTMIAAETFDELENNLALAIDRLPLSRNYFNAGLTL 1233


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 620 DSEFLNRLLKHIDPYPLSRM-YYNAANTMFYTTMEKLCRVQLQ 745
           D  FLN +   I      R+ YY    + FY T E+ C+ QL+
Sbjct: 410 DRSFLNEVATDIIHQHSERLDYYKGNFSQFYATREERCKNQLR 452


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/63 (20%), Positives = 26/63 (41%)
 Frame = +2

Query: 221 KISDVVMTMIFLLRSEKYHSLFKLLETTFDDYTCRPQMTQVQTDTLLDAVRSLLEMPSTT 400
           K  D+    +      K+     L  +++ DY    Q+  ++ D LLD  R+ +      
Sbjct: 438 KDQDITYICLSTAHPAKFDKAVNLALSSYSDYNFNTQVLPIEFDGLLDEERTCIFSGKPN 497

Query: 401 VDL 409
           +D+
Sbjct: 498 IDI 500


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +1

Query: 331 NDAGSNGHAVGRRAISVGDAFDHSRLDDRRYYAVVVCTLFQQSDYEI 471
           N+ G++G  +G+      D+F+ + L D ++  ++    F++SD  I
Sbjct: 749 NEGGNDGERMGKNLKGDTDSFNTALLKDGKFRLLLELCGFEESDNNI 795


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 599 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANT 700
           TE+ FC DS++  R L +   YPL    Y  + T
Sbjct: 388 TELFFCSDSKYYVRHLVNQQVYPLIDCGYGPSGT 421


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +2

Query: 410 TTVDIMRSSFARCFNSPIMKYAKIVLLQNVASQRDKRT-TLEELLIERGEKIQMLQPQQY 586
           TTV  + +  A+ F     +  K  LLQ   S+R+     ++E  +   E        Q 
Sbjct: 149 TTVQFLPTRLAKIFEKKASEVLKDNLLQTCNSKREGEVCDVKEPAVASSESSDCFNDMQE 208

Query: 587 INSGTEIPFCDDSEF-LNRLL 646
           +N+  ++    +S F  NRLL
Sbjct: 209 LNNIVDLRDYSNSRFQQNRLL 229


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 158 RNAARKLIHHYSLNSTS 208
           R   RKL+HH SLN+ S
Sbjct: 65  RKPTRKLVHHISLNNVS 81


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 599 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANT 700
           TE+  C+DS++  R L + + +PLS   +  +NT
Sbjct: 378 TELFQCEDSKYYVRHLVNEEVFPLSDCGFGPSNT 411


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = -1

Query: 645  SSLFKNSESS----QNGISV-PLLMYCCGCNICIFSPRSINN 535
            SS F+  ES+    Q  I+V PLL+ C  CN   FS RS+ +
Sbjct: 1230 SSAFQRYESTLTDDQCFINVSPLLLKCPSCNATSFSLRSVKS 1271


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 255 CCDRKSIIRCSNCSKPRL--TTTRADRK*RRFKRTRCWTPCDLC 380
           C D K  ++C  C KP L  +   +D +      ++CWT C  C
Sbjct: 369 CYDNKYAVKCKKCRKPILGISVKGSDGE----YHSQCWT-CGAC 407


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +1

Query: 169 SQTNPSLFVEQHQFYRIQNQRRGHDHDIFAAIGKVSFVVQTARNHV*RLHVQ--TANDAG 342
           SQ+ PSL VEQ++ + I N+    + +  +      +  QTA  H+    +Q  T  D  
Sbjct: 165 SQSPPSLDVEQNKPFSISNEPVEQETENSSTKDLQVYDFQTASEHLPEQSLQNTTYYDPS 224

Query: 343 SNGHAVGRRAISVGDAFDHSRLD 411
               +V    I  G +  H +LD
Sbjct: 225 KTYSSVNFEEIEYGKS--HEKLD 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,749
Number of Sequences: 5004
Number of extensions: 56364
Number of successful extensions: 231
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)