Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24c11
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   4.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   4.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.4  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 743 AIGHGIVFPWSCKTWYWPHC 684
           A GH ++ P S   +YW  C
Sbjct: 75  AAGHWVIHPCSSFRFYWDLC 94


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 743 AIGHGIVFPWSCKTWYWPHC 684
           A GH ++ P S   +YW  C
Sbjct: 75  AAGHWVIHPCSSFRFYWDLC 94


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 743 AIGHGIVFPWSCKTWYWPHC 684
           A GH ++ P S   +YW  C
Sbjct: 75  AAGHWVIHPCSSFRFYWDLC 94


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 176 LIHHYSLNSTSSTEYKISDVVMTMIFL 256
           L  HYS+NST+     I  + MT++ L
Sbjct: 239 LRRHYSMNSTTYVTLTIVLMTMTLMTL 265


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 647 KHIDPYPLSRMYYNAANTMFYTTMEKLCRV 736
           KH++   L R YY  +N +  TT++ L  V
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDV 411


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 647 KHIDPYPLSRMYYNAANTMFYTTMEKLCRV 736
           KH++   L R YY  +N +  TT++ L  V
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDV 411


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 385 LQQRSHGVQQRVRLNLRHLRSARVVV 308
           +++ +   +    LNL+HLR+A +V+
Sbjct: 51  MREETEDAEDTQTLNLKHLRAAVLVL 76


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 685 QCGQYHVLHDHGKTMPC 735
           QC +Y  +HD    M C
Sbjct: 472 QCEEYEYVHDEYTCMDC 488


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 589 QQRYRNSVLRRFRVFEQAAQTHRSVPA 669
           ++ YR+ +L  FR  + A+Q H+ + A
Sbjct: 5   KEHYRHILLFYFRKGKNASQAHKKLCA 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,904
Number of Sequences: 438
Number of extensions: 3934
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)