Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24c03
         (677 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase ...    29   5.8  
AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p pro...    29   5.8  
AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA...    29   5.8  
AY119029-1|AAM50889.1|  507|Drosophila melanogaster LP05465p pro...    29   7.7  
AE014134-2443|AAF53364.2|  620|Drosophila melanogaster CG8942-PA...    29   7.7  

>AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 393 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 569
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 570 MRVELGNGNRK 602
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


>AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 393 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 569
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 570 MRVELGNGNRK 602
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


>AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 393 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 569
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 570 MRVELGNGNRK 602
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


>AY119029-1|AAM50889.1|  507|Drosophila melanogaster LP05465p
           protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 645 CLSC*PTARCVSRDTCDCRSPTRHASAPRSCLGNCT 538
           C  C   A CV+ + C+C      + A + C+  C+
Sbjct: 277 CEKCSDNAHCVAPNQCECFPGYESSGADKKCVPKCS 312


>AE014134-2443|AAF53364.2|  620|Drosophila melanogaster CG8942-PA
           protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 645 CLSC*PTARCVSRDTCDCRSPTRHASAPRSCLGNCT 538
           C  C   A CV+ + C+C      + A + C+  C+
Sbjct: 277 CEKCSDNAHCVAPNQCECFPGYESSGADKKCVPKCS 312


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,225,782
Number of Sequences: 53049
Number of extensions: 717661
Number of successful extensions: 1940
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1940
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)