Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24b24
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   266   6e-72
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   264   2e-71
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   0.98 
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    29   2.3  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    28   5.2  
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ...    27   6.9  
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.      27   6.9  
AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm rece...    27   6.9  
U80027-17|AAC48114.1|   90|Caenorhabditis elegans Hypothetical p...    27   9.1  
U61946-8|AAC24392.1|  185|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  266 bits (653), Expect = 6e-72
 Identities = 124/157 (78%), Positives = 141/157 (89%)
 Frame = +1

Query: 88  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 267
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74

Query: 268 IAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 447
           IAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG
Sbjct: 75  IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYG 134

Query: 448 LDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMK 558
           +DFYVVL R G  +A RRR  G+VG  HR+ +E+++K
Sbjct: 135 MDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIK 171


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  264 bits (648), Expect = 2e-71
 Identities = 123/156 (78%), Positives = 138/156 (88%)
 Frame = +1

Query: 91  KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 270
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75

Query: 271 AVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGL 450
           AVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+
Sbjct: 76  AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGM 135

Query: 451 DFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMK 558
           DFYVVL R G  V+ RRR  G++G  HR+ KE+ +K
Sbjct: 136 DFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIK 171


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 283 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 441
           ++R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 424 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 546
           DP  GI G+  + V G   F +A R+  +GK     RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 384  AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 247
            AK+ + G ++ PQ  FS+F+  +  FF  +    T+  N  I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 345 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 256
           ++  DF+  +KDFF C   SD T  S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 300 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 199
           F SS+C ++SNL+  T+     C  SL   RLLS
Sbjct: 97  FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130


>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical protein
            Y76A2B.1 protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +2

Query: 350  GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 529
            GV +S PR I ASV  + +   SST         T  ++   +    H     QE    P
Sbjct: 946  GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005

Query: 530  TASQRKM 550
            T S R M
Sbjct: 1006 TPSSRNM 1012


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 291 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 178
           S CT+D   F   D+K+  C+ S+ K   Y +++ E+  H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245


>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
            protein Y76A2B.1 protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +2

Query: 350  GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 529
            GV +S PR I ASV  + +   SST         T  ++   +    H     QE    P
Sbjct: 946  GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005

Query: 530  TASQRKM 550
            T S R M
Sbjct: 1006 TPSSRNM 1012


>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +2

Query: 350  GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 529
            GV +S PR I ASV  + +   SST         T  ++   +    H     QE    P
Sbjct: 946  GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005

Query: 530  TASQRKM 550
            T S R M
Sbjct: 1006 TPSSRNM 1012


>AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 85 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 345 FIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDTKRPH 235
           ++  DF+T +K+FF   +   T  S+  +TT  K  H
Sbjct: 300 YVIKDFRTAVKNFFKRGTKSGTSPSSAVLTTKKKAWH 336


>U80027-17|AAC48114.1|   90|Caenorhabditis elegans Hypothetical
           protein T28A11.4 protein.
          Length = 90

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 277 GQQSFHYDGYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQ 143
           G+Q+FH++G +K A     WK       V P+ ++  S+  +IHQ
Sbjct: 51  GEQTFHFNGPEKGAFLDSDWKE------VDPSNYQMGSSHQKIHQ 89


>U61946-8|AAC24392.1|  185|Caenorhabditis elegans Hypothetical
           protein F47C12.7 protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 333 DFQTPLKDFFCFSSSDCTMDSNLFITTDTK 244
           DF T   +F CF S DC+ D+  +  T  K
Sbjct: 61  DFPTFHYEFNCFLSHDCSTDNKWYCQTRAK 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,136,467
Number of Sequences: 27780
Number of extensions: 274791
Number of successful extensions: 726
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)