Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24b23
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 217 9e-57
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 214 5e-56
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 116 2e-26
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 114 5e-26
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 56 2e-08
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 2.6
12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150 29 3.4
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 28 6.0
02_04_0551 + 23801464-23801802 28 6.0
11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674... 28 7.9
04_04_0650 + 26950912-26951397,26951552-26951728 28 7.9
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 217 bits (529), Expect = 9e-57
Identities = 106/181 (58%), Positives = 130/181 (71%), Gaps = 5/181 (2%)
Frame = +1
Query: 154 LKSSPAVLGMLTRLSRRSFATSKAL-----ASKPVTVRDALNQAIDEEMERDEKVFVLGE 318
L S P + +L RL + A + A A+K +TVR+ALN A+DEEM D VF++GE
Sbjct: 9 LGSGPMLGQVLRRLRPATAAAADAARAYSAAAKEMTVREALNSALDEEMSADPSVFLMGE 68
Query: 319 EVAQYDGAYKVTRGLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQ 498
EV +Y GAYK+++GL KYG +RV+DTPITE L+P+ EFMTFNFSMQ
Sbjct: 69 EVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQ 128
Query: 499 AIDHIINSAAKTFYMSAGTVPVPIVFRGPNGAASSVAAQHSQCFGAWYSHCPGLKVLMPY 678
AIDHIINSAAK+ YMSAG + VPIVFRGPNGAA+ V AQHSQC+ AWY+H PGLKVL+PY
Sbjct: 129 AIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLVPY 188
Query: 679 S 681
S
Sbjct: 189 S 189
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 214 bits (523), Expect = 5e-56
Identities = 99/157 (63%), Positives = 119/157 (75%)
Frame = +1
Query: 211 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRV 390
A + + A+K +TVR+ALN A+DEEM D VF++GEEV +Y GAYK+++GL KYG RV
Sbjct: 13 ARTYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRV 72
Query: 391 IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 570
+DTPITE L+P+ EFMTFNFSMQAIDHIINSAAK+ YMSAG + VPI
Sbjct: 73 LDTPITEAGFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPI 132
Query: 571 VFRGPNGAASSVAAQHSQCFGAWYSHCPGLKVLMPYS 681
VFRGPNGAA+ V AQHSQC+ AWY+H PGLKVL PYS
Sbjct: 133 VFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLTPYS 169
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 116 bits (278), Expect = 2e-26
Identities = 58/164 (35%), Positives = 87/164 (53%)
Frame = +1
Query: 178 GMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTR 357
G +++ + A S V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+
Sbjct: 52 GRMSKAESPASAASSKSDGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTK 111
Query: 358 GLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTF 537
GL + +GD RV+DTPI E L+P+ E M F + A + I N+
Sbjct: 112 GLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRPVVEGMNMGFLLLAYNQISNNCGMLH 171
Query: 538 YMSAGTVPVPIVFRGPNGAASSVAAQHSQCFGAWYSHCPGLKVL 669
Y S G +PIV RGP G + A+HSQ +++ PGL+++
Sbjct: 172 YTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMV 215
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 114 bits (275), Expect = 5e-26
Identities = 61/162 (37%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Frame = +1
Query: 196 SRRSFATSKALASKP----VTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGL 363
+RRS + SK V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+GL
Sbjct: 37 ARRSASADATAESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGL 96
Query: 364 WKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYM 543
+ +GD RV+DTPI E L+PI E M F + A + I N+ Y
Sbjct: 97 AEMFGDLRVLDTPIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYT 156
Query: 544 SAGTVPVPIVFRGPNGAASSVAAQHSQCFGAWYSHCPGLKVL 669
S G +PIV RGP G + A+HSQ +++ PGL+++
Sbjct: 157 SGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMV 198
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 56.4 bits (130), Expect = 2e-08
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 22/167 (13%)
Frame = +1
Query: 229 ASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPIT 408
A K V + A+NQA+ ++ D + +V GE+V + G ++ T GL ++G RV +TP+
Sbjct: 46 AGKEVNLFTAINQALHIALDTDPRSYVFGEDVG-FGGVFRCTTGLADRFGRNRVFNTPLC 104
Query: 409 EXXXXXXXXXXXXXXLKPICEFMTFNFSMQAID---------------------HIINSA 525
E + I E ++ A D I+N A
Sbjct: 105 EQGIAGFAVGLAAMGNRAIAEIQFADYIFPAFDQACLRLDQCFVPTYLYIQLLVQIVNEA 164
Query: 526 AKTFYMSAGTVPV-PIVFRGPNGAASSVAAQHSQCFGAWYSHCPGLK 663
AK Y S + R P GA HSQ A++ H PGLK
Sbjct: 165 AKFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPEAFFCHVPGLK 211
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 553 TVPVPIVFRGPNGAASSVAAQHSQCFGAWYSHCP 654
+V P++F G + A V FGAWYS P
Sbjct: 23 SVLTPLLFAGGDPRAQEVTTSSISRFGAWYSGSP 56
>12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150
Length = 57
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 255 CFKSSDRRGDGERRESLRFGRGSRSIRWCLQ 347
C K +RG G+R ESL + R + W +Q
Sbjct: 10 CAKGGHKRGLGDREESLAYTRRFLLVSWLMQ 40
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 148 MALKSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEK 300
M + PA+ L ++RRS K+LA K + R+ N + D+K
Sbjct: 177 MPHRKDPALPNTLNDINRRSQEIGKSLARKKLATREQKNPTSPDITNNDQK 227
>02_04_0551 + 23801464-23801802
Length = 112
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 580 GPNGAASSVAAQHSQCFGAW 639
G AA++VA QH+ C GAW
Sbjct: 11 GGGAAAAAVARQHAVCDGAW 30
>11_06_0618 +
25565780-25566064,25566855-25567046,25567144-25567416,
25567636-25567738,25568273-25568391,25568615-25568782,
25568908-25569386,25569742-25569850,25569905-25570070,
25571405-25571433
Length = 640
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 249 KRCFKSSDRRGDGERRESLRFGRGSRSIRW 338
KR F+ + RG ++ L FGRGSR W
Sbjct: 551 KRFFREHNMRGS-HNKDVLTFGRGSRENTW 579
>04_04_0650 + 26950912-26951397,26951552-26951728
Length = 220
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 163 SPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEME 288
SPA L + RL R ++ +++ PV +D Q +EE E
Sbjct: 10 SPAKLSLERRLPRATWTARRSVRFPPVRAQDQQQQVKEEEEE 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,717,039
Number of Sequences: 37544
Number of extensions: 388285
Number of successful extensions: 1174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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