Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24b23
         (682 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    26   0.96 
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    26   0.96 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   5.1  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    23   8.9  

>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 26.2 bits (55), Expect = 0.96
 Identities = 29/89 (32%), Positives = 36/89 (40%)
 Frame = +1

Query: 121 LFNSDIIFKMALKSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEK 300
           LF    I   A K+S  ++G  T+  RR     K   S     R+ L     E  ER   
Sbjct: 522 LFAGTKILSYAEKASTNLVGKFTQSVRRIVQDVKDEGSPGGMSREELL----ETNERLRA 577

Query: 301 VFVLGEEVAQYDGAYKVTRGLWKKYGDKR 387
           V +  EE   YD A K    L  KYGD +
Sbjct: 578 VRLRLEE--SYDTAKKALVNLMNKYGDSK 604


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 26.2 bits (55), Expect = 0.96
 Identities = 29/89 (32%), Positives = 36/89 (40%)
 Frame = +1

Query: 121 LFNSDIIFKMALKSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEK 300
           LF    I   A K+S  ++G  T+  RR     K   S     R+ L     E  ER   
Sbjct: 522 LFAGTKILSYAEKASTNLVGKFTQSVRRIVQDVKDEGSPGGMSREELL----ETNERLRA 577

Query: 301 VFVLGEEVAQYDGAYKVTRGLWKKYGDKR 387
           V +  EE   YD A K    L  KYGD +
Sbjct: 578 VRLRLEE--SYDTAKKALVNLMNKYGDSK 604


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 620  ECCAATLEAAPLGPRNTIGTGTV 552
            EC A+T E AP  P N+  + +V
Sbjct: 1304 ECSASTSEPAPAAPSNSTPSRSV 1326


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 523 AAKTFYMSAGTVPVPIVFRGPN-GAASSVAAQ 615
           A ++   +  T PVP V  GPN  A S+V++Q
Sbjct: 40  AERSISGTESTKPVPTVLGGPNLFAPSAVSSQ 71


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,571
Number of Sequences: 2352
Number of extensions: 13558
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)