Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24b19
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83235-1|CAB05775.1|  174|Caenorhabditis elegans Hypothetical pr...    37   0.014
AF016683-3|AAB66193.1|  497|Caenorhabditis elegans Hypothetical ...    28   6.7  

>Z83235-1|CAB05775.1|  174|Caenorhabditis elegans Hypothetical
           protein K10C3.2 protein.
          Length = 174

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +1

Query: 331 SAFLQKRLAKGQKFFDSGDYQMAKQRPG 414
           S+FLQK+L + +KFFDSGDY M K + G
Sbjct: 46  SSFLQKKLQQ-RKFFDSGDYAMDKSKAG 72



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 475 IPTPETVPLRKTSIIQP 525
           IP P+TVP RK SII P
Sbjct: 133 IPRPDTVPQRKASIINP 149


>AF016683-3|AAB66193.1|  497|Caenorhabditis elegans Hypothetical
           protein K09F6.2 protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 94  STIEFLCSDFHDFSLDRLFSCFILF 20
           S + F C  FH FSL+  F CF++F
Sbjct: 471 SKLVFFCFFFH-FSLNVFFCCFVIF 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,856,175
Number of Sequences: 27780
Number of extensions: 201964
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)